Re: [ccp4bb] PHENIX vs REFMAC refinement had me fooled

[Yuri Pompeu]

PHENIX has an otpion under the reflection editor program that will create R 
flags that are compatible with ccp4 programs.
Another point worth mentioning is in phenix.refine it is appropriate to use the 
data.mtz files generated each round of refinement, as these are the raw data 
plus the Rfree flags. In refmac however the newly generated refmacX.mtz file 
contains phase info as PHIC calculated from your model. Using this for 
subsequent rounds of refinement results in terrific looking maps as they are 
now biased (even more so) by the input model.