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Dear Yuri et al.,

I like the fact that one must not use the output mtz-file from refmac as
input to the next round of refinement. It encourages to think about why
this is and then makes you realise what your data really are: the result
of data processing and that the coordinate file is only a model which
one tries to make as consistent as possible with the data.

Tim


On 12/11/2011 06:28 AM, Yuri Pompeu wrote:
> PHENIX has an otpion under the reflection editor program that will create R 
> flags that are compatible with ccp4 programs.
> Another point worth mentioning is in phenix.refine it is appropriate to use 
> the data.mtz files generated each round of refinement, as these are the raw 
> data plus the Rfree flags. In refmac however the newly generated refmacX.mtz 
> file contains phase info as PHIC calculated from your model. Using this for 
> subsequent rounds of refinement results in terrific looking maps as they are 
> now biased (even more so) by the input model.
> 

- -- 
Dr Tim Gruene
Institut fuer anorganische Chemie
Tammannstr. 4
D-37077 Goettingen

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