> What about the bogey of Fourier truncation ripples--I have heard many have
> been fooled by the into thinking they were seeing orbitals. How does one
> tell the difference?


Indeed, there are such dangers. Hints are here:

On the possibility of observation of valence electron density for
individual bonds in proteins in conventional difference maps. (2004). Acta
Cryst., D60, 260-274.

Have a look at Figure 4. Then compare with Figure 1 here: J. Biol. Chem.
(1999) 274, 20753-29755.

Bottom line is: be careful with unbalanced Fourier syntheses, balanced ones
may be a safer option.

Pavel

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