Sorry, I was thinking you were talking about Scuba. Do you see the segmentation properly, in colors? If not, there was probably an error in loading the segmentation; do you see any errors in the shell window?
If you do see the segmentation volume displayed properly as a translucent color overlay on the anatomical, are you sure you are using the Edit Segmentation tool? It's a paintbrush over a volume divided into quarters. Does clicking and dragging with the tool actually change the segmentation volume, that is, can you mouse over the edited voxels and verify that the values in the "Sgmtn label" line in the tools window matches the value you selected in the Segmentation Brush Info dialog? On Thu, May 17, 2007 at 02:56:57PM -0400, Jared Conley wrote: > Yes, I believe so. The layer's color map is set to > FreeSurferColorLUT.txt when loading the segmentation. The Segmentation > Brush source is set at Segmentation (under Configure Segmentation > Brush)--I imagine that's what you are referring to when you say "target > layer." > > Kevin Teich wrote: > >Are you sure the Target Layer is set to the segmentation volume layer? And > >that that layer's color map type is set to LUT? > > > >On Thu, May 17, 2007 at 11:23:49AM -0400, Jared Conley wrote: > > > >>I am attempting to edit the segmentation results in TkMedit, according > >>to the following Wiki directions ( > > >>TkMeditGuide/TkMeditWorkingWithData/TkMeditSegmentations): > >>A segmentation can be edited with the Edit Segmentation tool, which can > >>be activated by pushing the icon_copy.gif button on the Main Toolbar, by > >>choosing *Tools->Edit Segmentation*, or by pressing the 'g' key. > >> > >>By clicking with button 2 with this tool, you can 'paint' a label in the > >>segmentation. The color used can be set in the dialog box brought up by > >>choosing *Tools->Configure Segmentation Brush....* > >> > >>However, I am not able to change the color to match the structure I am > >>wanting to edit (I have tried selecting three different structures at > >>random and the color of the editing remains grey). Any ideas? -- Kevin Teich _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
