Please send the result of the command: uname -a
On Mon, Feb 21, 2011 at 10:31, Carolina Valencia <cvalen...@linkdx.com.co>wrote: > Hi Bruce, > > I'm experimenting problems with the installation on Ubuntu too. > There's is warning in the welcome message, it seems that something is > missing: > > -------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 -------- > Setting up environment for FreeSurfer/FS-FAST (and FSL) > WARNING: /home/cvalencia/Descargas/freesurfer/fsfast does not exist > FREESURFER_HOME /home/cvalencia/Descargas/freesurfer > FSFAST_HOME /home/cvalencia/Descargas/freesurfer/fsfast > FSF_OUTPUT_FORMAT nii > SUBJECTS_DIR /home/cvalencia/Descargas/freesurfer/subjects > MNI_DIR /home/cvalencia/Descargas/freesurfer/mni > FSL_DIR /usr/share/fsl/4.1 > > > I try to test it and it shows > cvalencia@cvalencia-Precision-WorkStation-T3400:~$ tkmedit > /home/cvalencia/Descargas/freesurfer/bin/tkmedit.bin: Formato de ejecutable > incorrecto. Binary file not executable. > > Thanks a lot, > > Carolina > > 2011/2/18 Bruce Fischl <fis...@nmr.mgh.harvard.edu> > >> Hi Jie, >> >> what hardware are you using? Is it a 64 bit operating system? >> >> cheers >> Bruce >> >> On Sat, 19 Feb 2011, Liukarl wrote: >> >> >>> >>> >>> >>> >>> >>> >>> >>> >>> Hello, Freesurfer experts: >>> >>> >>> >>> I am new to freesurfer and try to >>> install the newest version of freesurfer in Ubuntu system. I closely >>> followed the instructions, and the only difference is that I >>> installed it in my Documents, instead of local folder. >>> >>> >>> >>> Below is the output after “source >>> $FREESURFER_HOME/SetUpFreeSurfer.sh” >>> >>> >>> >>> -------- >>> freesurfer-Linux-centos4-stable-pub-v5.0.0 -------- >>> >>> Setting up environment for >>> FreeSurfer/FS-FAST (and FSL) >>> >>> FREESURFER_HOME >>> /home/jie/Documents/freesurfer/ >>> >>> FSFAST_HOME >>> /home/jie/Documents/freesurfer//fsfast >>> >>> FSF_OUTPUT_FORMAT nii >>> >>> SUBJECTS_DIR >>> /home/jie/Documents/freesurfer//subjects >>> >>> MNI_DIR >>> /home/jie/Documents/freesurfer//mni >>> >>> >>> >>> >>> Everything seems fine and I also added >>> the .license file to the freesurfer folder. >>> >>> >>> >>> But when I test it by “tkmedit bert >>> orig.mgz”, it reponds “Illegal instruction” >>> >>> >>> >>> If I type in “recon-all”, it will >>> show >>> >>> “ Required Arguments: >>> >>> -subjid <subjid> >>> >>> -<process directive>…... >>> ” >>> and the other arguments. >>> >>> >>> >>> How to fix the problem and make >>> Fressurfer run? Any help is appreciated. Thanks a lot! >>> >>> >>> >>> Jie >>> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it >> is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> > > > -- > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
