It seems you are running the 64-bit version of FreeSurfer in a 32-bit OS
2011/2/21 Carolina Valencia <cvalen...@linkdx.com.co> > > Linux cvalencia-Precision-WorkStation-T3400 2.6.35-25-generic-pae > #44-Ubuntu SMP Fri Jan 21 19:01:46 UTC 2011 i686 GNU/Linux > > Thanks, > > > 2011/2/21 Pedro Paulo de Magalhães Oliveira Junior <p...@netfilter.com.br> > > Please send the result of the command: >> >> uname -a >> >> >> On Mon, Feb 21, 2011 at 10:31, Carolina Valencia <cvalen...@linkdx.com.co >> > wrote: >> >>> Hi Bruce, >>> >>> I'm experimenting problems with the installation on Ubuntu too. >>> There's is warning in the welcome message, it seems that something is >>> missing: >>> >>> -------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 -------- >>> Setting up environment for FreeSurfer/FS-FAST (and FSL) >>> WARNING: /home/cvalencia/Descargas/freesurfer/fsfast does not exist >>> FREESURFER_HOME /home/cvalencia/Descargas/freesurfer >>> FSFAST_HOME /home/cvalencia/Descargas/freesurfer/fsfast >>> FSF_OUTPUT_FORMAT nii >>> SUBJECTS_DIR /home/cvalencia/Descargas/freesurfer/subjects >>> MNI_DIR /home/cvalencia/Descargas/freesurfer/mni >>> FSL_DIR /usr/share/fsl/4.1 >>> >>> >>> I try to test it and it shows >>> cvalencia@cvalencia-Precision-WorkStation-T3400:~$ tkmedit >>> /home/cvalencia/Descargas/freesurfer/bin/tkmedit.bin: Formato de >>> ejecutable incorrecto. Binary file not executable. >>> >>> Thanks a lot, >>> >>> Carolina >>> >>> 2011/2/18 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>> >>>> Hi Jie, >>>> >>>> what hardware are you using? Is it a 64 bit operating system? >>>> >>>> cheers >>>> Bruce >>>> >>>> On Sat, 19 Feb 2011, Liukarl wrote: >>>> >>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> Hello, Freesurfer experts: >>>>> >>>>> >>>>> >>>>> I am new to freesurfer and try to >>>>> install the newest version of freesurfer in Ubuntu system. I closely >>>>> followed the instructions, and the only difference is that I >>>>> installed it in my Documents, instead of local folder. >>>>> >>>>> >>>>> >>>>> Below is the output after “source >>>>> $FREESURFER_HOME/SetUpFreeSurfer.sh” >>>>> >>>>> >>>>> >>>>> -------- >>>>> freesurfer-Linux-centos4-stable-pub-v5.0.0 -------- >>>>> >>>>> Setting up environment for >>>>> FreeSurfer/FS-FAST (and FSL) >>>>> >>>>> FREESURFER_HOME >>>>> /home/jie/Documents/freesurfer/ >>>>> >>>>> FSFAST_HOME >>>>> /home/jie/Documents/freesurfer//fsfast >>>>> >>>>> FSF_OUTPUT_FORMAT nii >>>>> >>>>> SUBJECTS_DIR >>>>> /home/jie/Documents/freesurfer//subjects >>>>> >>>>> MNI_DIR >>>>> /home/jie/Documents/freesurfer//mni >>>>> >>>>> >>>>> >>>>> >>>>> Everything seems fine and I also added >>>>> the .license file to the freesurfer folder. >>>>> >>>>> >>>>> >>>>> But when I test it by “tkmedit bert >>>>> orig.mgz”, it reponds “Illegal instruction” >>>>> >>>>> >>>>> >>>>> If I type in “recon-all”, it will >>>>> show >>>>> >>>>> “ Required Arguments: >>>>> >>>>> -subjid <subjid> >>>>> >>>>> -<process directive>…... >>>>> ” >>>>> and the other arguments. >>>>> >>>>> >>>>> >>>>> How to fix the problem and make >>>>> Fressurfer run? Any help is appreciated. Thanks a lot! >>>>> >>>>> >>>>> >>>>> Jie >>>>> >>>> >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom >>>> it is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>> in error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> >>>> >>> >>> >>> -- >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> The information in this e-mail is intended only for the person to whom it >>> is >>> addressed. If you believe this e-mail was sent to you in error and the >>> e-mail >>> contains patient information, please contact the Partners Compliance >>> HelpLine at >>> http://www.partners.org/complianceline . If the e-mail was sent to you >>> in error >>> but does not contain patient information, please contact the sender and >>> properly >>> dispose of the e-mail. >>> >>> >> > >
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