run this command sudo rm -rf $FREESURFER_HOME
2011/2/21 Carolina Valencia <cvalen...@linkdx.com.co> > Thanks Pedro, > > How I uninstall that version to re-install the correct version? > I look for some answers and try > > rm -rf $FREESURFER_HOME > > It says that I don't have permission,how I can unistall it, if i'm the > admin user? > > Thanks in advance, > > Carolina > > 2011/2/21 Pedro Paulo de Magalhães Oliveira Junior <p...@netfilter.com.br> > >> It seems you are running the 64-bit version of FreeSurfer in a 32-bit OS >> >> >> 2011/2/21 Carolina Valencia <cvalen...@linkdx.com.co> >> >> >>> Linux cvalencia-Precision-WorkStation-T3400 2.6.35-25-generic-pae >>> #44-Ubuntu SMP Fri Jan 21 19:01:46 UTC 2011 i686 GNU/Linux >>> >>> Thanks, >>> >>> >>> 2011/2/21 Pedro Paulo de Magalhães Oliveira Junior <p...@netfilter.com.br >>> > >>> >>> Please send the result of the command: >>>> >>>> uname -a >>>> >>>> >>>> On Mon, Feb 21, 2011 at 10:31, Carolina Valencia < >>>> cvalen...@linkdx.com.co> wrote: >>>> >>>>> Hi Bruce, >>>>> >>>>> I'm experimenting problems with the installation on Ubuntu too. >>>>> There's is warning in the welcome message, it seems that something is >>>>> missing: >>>>> >>>>> -------- freesurfer-Linux-centos4_x86_64-stable-pub-v5.0.0 -------- >>>>> Setting up environment for FreeSurfer/FS-FAST (and FSL) >>>>> WARNING: /home/cvalencia/Descargas/freesurfer/fsfast does not exist >>>>> FREESURFER_HOME /home/cvalencia/Descargas/freesurfer >>>>> FSFAST_HOME /home/cvalencia/Descargas/freesurfer/fsfast >>>>> FSF_OUTPUT_FORMAT nii >>>>> SUBJECTS_DIR /home/cvalencia/Descargas/freesurfer/subjects >>>>> MNI_DIR /home/cvalencia/Descargas/freesurfer/mni >>>>> FSL_DIR /usr/share/fsl/4.1 >>>>> >>>>> >>>>> I try to test it and it shows >>>>> cvalencia@cvalencia-Precision-WorkStation-T3400:~$ tkmedit >>>>> /home/cvalencia/Descargas/freesurfer/bin/tkmedit.bin: Formato de >>>>> ejecutable incorrecto. Binary file not executable. >>>>> >>>>> Thanks a lot, >>>>> >>>>> Carolina >>>>> >>>>> 2011/2/18 Bruce Fischl <fis...@nmr.mgh.harvard.edu> >>>>> >>>>>> Hi Jie, >>>>>> >>>>>> what hardware are you using? Is it a 64 bit operating system? >>>>>> >>>>>> cheers >>>>>> Bruce >>>>>> >>>>>> On Sat, 19 Feb 2011, Liukarl wrote: >>>>>> >>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> Hello, Freesurfer experts: >>>>>>> >>>>>>> >>>>>>> >>>>>>> I am new to freesurfer and try to >>>>>>> install the newest version of freesurfer in Ubuntu system. I closely >>>>>>> followed the instructions, and the only difference is that I >>>>>>> installed it in my Documents, instead of local folder. >>>>>>> >>>>>>> >>>>>>> >>>>>>> Below is the output after “source >>>>>>> $FREESURFER_HOME/SetUpFreeSurfer.sh” >>>>>>> >>>>>>> >>>>>>> >>>>>>> -------- >>>>>>> freesurfer-Linux-centos4-stable-pub-v5.0.0 -------- >>>>>>> >>>>>>> Setting up environment for >>>>>>> FreeSurfer/FS-FAST (and FSL) >>>>>>> >>>>>>> FREESURFER_HOME >>>>>>> /home/jie/Documents/freesurfer/ >>>>>>> >>>>>>> FSFAST_HOME >>>>>>> /home/jie/Documents/freesurfer//fsfast >>>>>>> >>>>>>> FSF_OUTPUT_FORMAT nii >>>>>>> >>>>>>> SUBJECTS_DIR >>>>>>> /home/jie/Documents/freesurfer//subjects >>>>>>> >>>>>>> MNI_DIR >>>>>>> /home/jie/Documents/freesurfer//mni >>>>>>> >>>>>>> >>>>>>> >>>>>>> >>>>>>> Everything seems fine and I also added >>>>>>> the .license file to the freesurfer folder. >>>>>>> >>>>>>> >>>>>>> >>>>>>> But when I test it by “tkmedit bert >>>>>>> orig.mgz”, it reponds “Illegal instruction” >>>>>>> >>>>>>> >>>>>>> >>>>>>> If I type in “recon-all”, it will >>>>>>> show >>>>>>> >>>>>>> “ Required Arguments: >>>>>>> >>>>>>> -subjid <subjid> >>>>>>> >>>>>>> -<process directive>…... >>>>>>> ” >>>>>>> and the other arguments. >>>>>>> >>>>>>> >>>>>>> >>>>>>> How to fix the problem and make >>>>>>> Fressurfer run? Any help is appreciated. Thanks a lot! >>>>>>> >>>>>>> >>>>>>> >>>>>>> Jie >>>>>>> >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> The information in this e-mail is intended only for the person to whom >>>>>> it is >>>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>>> e-mail >>>>>> contains patient information, please contact the Partners Compliance >>>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>>>> you in error >>>>>> but does not contain patient information, please contact the sender >>>>>> and properly >>>>>> dispose of the e-mail. >>>>>> >>>>>> >>>>> >>>>> >>>>> -- >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to whom >>>>> it is >>>>> addressed. If you believe this e-mail was sent to you in error and the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>>> in error >>>>> but does not contain patient information, please contact the sender and >>>>> properly >>>>> dispose of the e-mail. >>>>> >>>>> >>>> >>> >>> >> > > > -- >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
