I don't think it does. Jean manually labeled LGN in a few cases for me a few years ago, and I vaguely remember that LGN did not overlap with our thalamus seg (but I could be wrong). doug
Bruce Fischl wrote: > I dint think it does, but maybe jean or David can confirm > > > On Sep 2, 2011, at 1:07 PM, Ritobrato Datta <rida...@mail.med.upenn.edu> > wrote: > > >> Actually I have the same question - does the thalamus proper include LGN ? >> >> ----- Original Message ----- >> From: "Douglas N Greve" <gr...@nmr.mgh.harvard.edu> >> To: "Tetiana Dadakova" <tetian...@gmail.com> >> Cc: freesurfer@nmr.mgh.harvard.edu >> Sent: Friday, September 2, 2011 12:28:45 PM >> Subject: Re: [Freesurfer] what is thalamus-proper and clusters-table related >> question >> >> I'm not sure about #1, maybe BF can chime in. >> >> Tetiana Dadakova wrote: >> >>> Dear FS list, >>> >>> 1. What does a label Thalamus Proper include? Is it the same as thalamus? >>> >>> 2. After correcting for multiple comparisons, I get a table of >>> clusters. I have several questions regarding this table: What do the >>> columns Max, CWPLow, and CWPHigh represent? >>> >> 1. CWP - cluster-wise pvalue. The pvalue of the cluster corrected for >> multiple comparisons >> 2. CWPLow - lower 90% confidence limit of CWP based on binomial >> distribution >> 3. CWPHi - upper 90% confidence limit of CWP based on binomial >> distribution >> >> >>> Regarding the NVtxs >>> column: is it the number of vertexes in cluster? >>> >> Yes >> >>> What kind of information can I get from this value? >>> >> It is not very informative so don't feel like you have to use it. It is >> good for assuring that the software is doing the right thing. >> >>> If two clusters have different areas but the same number of vertexes, does >>> it mean something? >>> >>> >> It means that the area of the component triangles that make up the >> vertices is different. >> >> doug >> >>> Thank you very much for your help and for your time, >>> Tanja. >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >>> >> -- >> Douglas N. Greve, Ph.D. >> MGH-NMR Center >> gr...@nmr.mgh.harvard.edu >> Phone Number: 617-724-2358 >> Fax: 617-726-7422 >> >> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting >> FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > > > -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: www.nmr.mgh.harvard.edu/facility/filedrop/index.html _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
