Hi Sarah if it is correct, you'll probably need to bug Ziad and the SUMA guys about why the colors are wrong. If you are resampling the parcellation make sure it is done with nearest neighbor and not e.g. trilinear or sinc
cheers Bruce On Tue, 24 Apr 2012, Baum, Sarah H wrote: > It might take me a little longer because our data is organized a little > differently, but I will definitely check it out in tksurfer and get back > to you on this. > > > > > > On 4/24/12 3:12 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > >> Hi Sarah >> >> can you look at the aparc.a2009s.annot in tksurfer and see if it looks >> right? >> >> Bruce >> On Tue, 24 Apr 2012, Baum, Sarah H wrote: >> >>> Hi, >>> >>> Currently it's not doing that. I'm using the aparc.a2009s_rank file that >>> I've aligned to the anatomy with @SUMA_AlignToExperiment. >>> >>> >>> >>> >>> >>> On 4/24/12 2:45 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >>> >>>> Hi Sarah >>>> >>>> what parcellation do you mean? Our standard anatomically-based >>>> parcellatinos will color the same parcels the same color. >>>> >>>> cheers >>>> Bruce >>>> On Tue, 24 Apr >>>> 2012, Baum, Sarah H wrote: >>>> >>>>> Hi- >>>>> >>>>> I'm looking to compare two parcellations (one is a stroke patient with >>>>> her brain as is, the other is the same subject with the lesion "fixed" >>>>> run as a separate subject). It would be helpful if the parcellations >>>>> would color the same area the same color, but currently every single >>>>> ROI >>>>> is colored differently than the corresponding parcellation in the >>>>> other >>>>> subject's brain. I looked up the color table in the .annot file, and >>>>> the >>>>> RGB coordinates listed for each region are exactly the same for each >>>>> surface volume. Is there any easy way to make the colors the same? >>>>> >>>>> If it helps? I use AFNI/SUMA for visualizing data. >>>>> >>>>> Thanks in advance, >>>>> Sarah >>>>> >>>>> >>>>> Sarah H. Baum >>>>> Ph.D. Candidate, Neuroscience >>>>> sarah.h.b...@uth.tmc.edu >>>>> w: 713.500.5089 >>>>> c: 571.225.7007 >>>>> >>>>> _______________________________________________ >>>>> Freesurfer mailing list >>>>> Freesurfer@nmr.mgh.harvard.edu >>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>> >>>>> >>>>> >>>> >>>> >>>> The information in this e-mail is intended only for the person to whom >>>> it >>>> is >>>> addressed. If you believe this e-mail was sent to you in error and the >>>> e-mail >>>> contains patient information, please contact the Partners Compliance >>>> HelpLine at >>>> http://www.partners.org/complianceline . If the e-mail was sent to you >>>> in >>>> error >>>> but does not contain patient information, please contact the sender and >>>> properly >>>> dispose of the e-mail. >>>> >>> >>> >>> >>> > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
