Yes, everything is good in tksurfer, but something after @SUMA_Make_Spec_FS is causing an issue. Thanks for the help!
On 4/24/12 3:23 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >Hi Sarah > >if it is correct, you'll probably need to bug Ziad and the SUMA guys >about why the colors are wrong. If you are resampling the parcellation >make >sure it is done with nearest neighbor and not e.g. trilinear or sinc > >cheers >Bruce >On Tue, 24 Apr 2012, Baum, Sarah H wrote: > >> It might take me a little longer because our data is organized a little >> differently, but I will definitely check it out in tksurfer and get back >> to you on this. >> >> >> >> >> >> On 4/24/12 3:12 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >> >>> Hi Sarah >>> >>> can you look at the aparc.a2009s.annot in tksurfer and see if it looks >>> right? >>> >>> Bruce >>> On Tue, 24 Apr 2012, Baum, Sarah H wrote: >>> >>>> Hi, >>>> >>>> Currently it's not doing that. I'm using the aparc.a2009s_rank file >>>>that >>>> I've aligned to the anatomy with @SUMA_AlignToExperiment. >>>> >>>> >>>> >>>> >>>> >>>> On 4/24/12 2:45 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >>>> >>>>> Hi Sarah >>>>> >>>>> what parcellation do you mean? Our standard anatomically-based >>>>> parcellatinos will color the same parcels the same color. >>>>> >>>>> cheers >>>>> Bruce >>>>> On Tue, 24 Apr >>>>> 2012, Baum, Sarah H wrote: >>>>> >>>>>> Hi- >>>>>> >>>>>> I'm looking to compare two parcellations (one is a stroke patient >>>>>>with >>>>>> her brain as is, the other is the same subject with the lesion >>>>>>"fixed" >>>>>> run as a separate subject). It would be helpful if the parcellations >>>>>> would color the same area the same color, but currently every single >>>>>> ROI >>>>>> is colored differently than the corresponding parcellation in the >>>>>> other >>>>>> subject's brain. I looked up the color table in the .annot file, and >>>>>> the >>>>>> RGB coordinates listed for each region are exactly the same for each >>>>>> surface volume. Is there any easy way to make the colors the same? >>>>>> >>>>>> If it helps? I use AFNI/SUMA for visualizing data. >>>>>> >>>>>> Thanks in advance, >>>>>> Sarah >>>>>> >>>>>> >>>>>> Sarah H. Baum >>>>>> Ph.D. Candidate, Neuroscience >>>>>> sarah.h.b...@uth.tmc.edu >>>>>> w: 713.500.5089 >>>>>> c: 571.225.7007 >>>>>> >>>>>> _______________________________________________ >>>>>> Freesurfer mailing list >>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>> >>>>>> >>>>>> >>>>> >>>>> >>>>> The information in this e-mail is intended only for the person to >>>>>whom >>>>> it >>>>> is >>>>> addressed. If you believe this e-mail was sent to you in error and >>>>>the >>>>> e-mail >>>>> contains patient information, please contact the Partners Compliance >>>>> HelpLine at >>>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>>>you >>>>> in >>>>> error >>>>> but does not contain patient information, please contact the sender >>>>>and >>>>> properly >>>>> dispose of the e-mail. >>>>> >>>> >>>> >>>> >>>> >> >> >> >> _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
