sure. I advise bugging Ziad! Bruce On Wed, 25 Apr 2012, Baum, Sarah H wrote:
> Yes, everything is good in tksurfer, but something after > @SUMA_Make_Spec_FS is causing an issue. Thanks for the help! > > > > > > On 4/24/12 3:23 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: > >> Hi Sarah >> >> if it is correct, you'll probably need to bug Ziad and the SUMA guys >> about why the colors are wrong. If you are resampling the parcellation >> make >> sure it is done with nearest neighbor and not e.g. trilinear or sinc >> >> cheers >> Bruce >> On Tue, 24 Apr 2012, Baum, Sarah H wrote: >> >>> It might take me a little longer because our data is organized a little >>> differently, but I will definitely check it out in tksurfer and get back >>> to you on this. >>> >>> >>> >>> >>> >>> On 4/24/12 3:12 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >>> >>>> Hi Sarah >>>> >>>> can you look at the aparc.a2009s.annot in tksurfer and see if it looks >>>> right? >>>> >>>> Bruce >>>> On Tue, 24 Apr 2012, Baum, Sarah H wrote: >>>> >>>>> Hi, >>>>> >>>>> Currently it's not doing that. I'm using the aparc.a2009s_rank file >>>>> that >>>>> I've aligned to the anatomy with @SUMA_AlignToExperiment. >>>>> >>>>> >>>>> >>>>> >>>>> >>>>> On 4/24/12 2:45 PM, "Bruce Fischl" <fis...@nmr.mgh.harvard.edu> wrote: >>>>> >>>>>> Hi Sarah >>>>>> >>>>>> what parcellation do you mean? Our standard anatomically-based >>>>>> parcellatinos will color the same parcels the same color. >>>>>> >>>>>> cheers >>>>>> Bruce >>>>>> On Tue, 24 Apr >>>>>> 2012, Baum, Sarah H wrote: >>>>>> >>>>>>> Hi- >>>>>>> >>>>>>> I'm looking to compare two parcellations (one is a stroke patient >>>>>>> with >>>>>>> her brain as is, the other is the same subject with the lesion >>>>>>> "fixed" >>>>>>> run as a separate subject). It would be helpful if the parcellations >>>>>>> would color the same area the same color, but currently every single >>>>>>> ROI >>>>>>> is colored differently than the corresponding parcellation in the >>>>>>> other >>>>>>> subject's brain. I looked up the color table in the .annot file, and >>>>>>> the >>>>>>> RGB coordinates listed for each region are exactly the same for each >>>>>>> surface volume. Is there any easy way to make the colors the same? >>>>>>> >>>>>>> If it helps? I use AFNI/SUMA for visualizing data. >>>>>>> >>>>>>> Thanks in advance, >>>>>>> Sarah >>>>>>> >>>>>>> >>>>>>> Sarah H. Baum >>>>>>> Ph.D. Candidate, Neuroscience >>>>>>> sarah.h.b...@uth.tmc.edu >>>>>>> w: 713.500.5089 >>>>>>> c: 571.225.7007 >>>>>>> >>>>>>> _______________________________________________ >>>>>>> Freesurfer mailing list >>>>>>> Freesurfer@nmr.mgh.harvard.edu >>>>>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>>>>> >>>>>>> >>>>>>> >>>>>> >>>>>> >>>>>> The information in this e-mail is intended only for the person to >>>>>> whom >>>>>> it >>>>>> is >>>>>> addressed. If you believe this e-mail was sent to you in error and >>>>>> the >>>>>> e-mail >>>>>> contains patient information, please contact the Partners Compliance >>>>>> HelpLine at >>>>>> http://www.partners.org/complianceline . If the e-mail was sent to >>>>>> you >>>>>> in >>>>>> error >>>>>> but does not contain patient information, please contact the sender >>>>>> and >>>>>> properly >>>>>> dispose of the e-mail. >>>>>> >>>>> >>>>> >>>>> >>>>> >>> >>> >>> >>> > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
