Clelia, Ide be willing to bet the error has something to do with the "%" sign in the path to the data file. Would it be possible for you to place the file somewhere such the the absolute path does not contain a "%" sign?
-Zeke On 06/11/2013 12:37 PM, clelia pellicano wrote: > Dear all, > > I'm trying to import my data in Freesurfer. I have it on a folder on my > desktop. I set my SUBJECTS_DIR variable to my subjects directory (other > folder on my desktop). When I run recon-all -i paths_to_myimputfiles > -subjid my_sub_name, I got: > > [cpellica@wmen-ps2208 freesurfer]$ recon-all -i > /home/cpellica/Desktop/MRIs%201-5/001/IM-0003-0001.dcm -subjid 001 > ERROR: cannot find /home/cpellica/Desktop/MRIs%201-5/001/IM-0003-0001.dcm > Linux wmen-ps2208 2.6.32-358.11.1.el6.x86_64 #1 SMP Wed May 15 10:48:38 > EDT 2013 x86_64 x86_64 x86_64 GNU/Linux > > recon-all -s exited with ERRORS at Tue Jun 11 17:24:51 BST 2013 > > I don't understand why it is not finding my data since they are on my > desktop. > Could you help me? > > > Thanks > > > C. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
