Hi clelia
can you ls that file and confirm that exists? And check the permissions?
Also, note that even if it had found it you didn't tell it to do anything.
You probably want to specify -all on the recon-all command line as well.
cheers
Bruce
On Tue, 11 Jun 2013, clelia pellicano wrote:
Dear all,
I'm trying to import my data in Freesurfer. I have it on a folder on my
desktop. I set my SUBJECTS_DIR variable to my subjects directory (other
folder on my desktop). When I run recon-all -i paths_to_myimputfiles -subjid
my_sub_name, I got:
[cpellica@wmen-ps2208 freesurfer]$ recon-all -i
/home/cpellica/Desktop/MRIs%201-5/001/IM-0003-0001.dcm -subjid 001
ERROR: cannot find /home/cpellica/Desktop/MRIs%201-5/001/IM-0003-0001.dcm
Linux wmen-ps2208 2.6.32-358.11.1.el6.x86_64 #1 SMP Wed May 15 10:48:38 EDT
2013 x86_64 x86_64 x86_64 GNU/Linux
recon-all -s exited with ERRORS at Tue Jun 11 17:24:51 BST 2013
I don't understand why it is not finding my data since they are on my
desktop.
Could you help me?
Thanks
C.
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