Hi Daniel, bbregister is completely independent of the longitudinal stream, so if it fails, it has other reasons (e.g. bad initial alignment). You could try to switch the initial alignment to some other methods.
Best, Martin On Jun 14, 2013, at 3:25 AM, Daniel Garcia <d.garcia-...@icm-institute.org> wrote: > Dear Freesurfer Users, > > I'm having a problem to register my PET images into the longitudinal > pipeline of freesurfer (version 5.1). > > I have use bbregister without any problem to put the PET image into the > crossectional images but it fails to register to the long version of it. > Someone can tell me if I'm doing something wrong? > > bbregister -s P09_TA --mov pet_09.nii --init-fsl --reg matrix.mat --o > pet2free.mgz > > This last command works perfectly, but > > bbregister -s P09_TA.long.P09 --mov pet_09.nii --init-fsl --reg > matrix.mat --o pet2free.mgz > > Fails completely. > > My objective is to project my pet cortex into the surface in > longitudinal that is why I'm interested in this processing. Maybe you > can tell my another way of doing this. > > Thank you very much. > > Daniel > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > --------------------------------- Dr. Martin Reuter Assistant in Neuroscience - Massachusetts General Hospital Instructor in Neurology - Harvard Medical School MGH / HMS / MIT A.A.Martinos Center for Biomedical Imaging 149 Thirteenth Street, Suite 2301 Charlestown, MA 02129 Phone: +1-617-724-5652 Email: mreu...@nmr.mgh.harvard.edu reu...@mit.edu Web : http://reuter.mit.edu
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
