The longitudinal one, about 20 mm out of the good registration Le jeudi 20 juin 2013 à 10:36 -0400, Bruce Fischl a écrit : > Which one failed? > Bruce > > On Jun 20, 2013, at 10:29 AM, Daniel Garcia <d.garcia-...@icm-institute.org> > wrote: > > > Hello all, > > > > Thank you very much for your comments and sorry for not being too > > precise with my problem before. > > > > It seemed at the begining to me very strange that the same image > > processed in crossectional or longitudinal had different results in > > registration and I thought it was something related to that more than > > the initialization > > > > I changed the initialization and it seems to work. Thank you very much. > > > > Daniel > > > > Le mercredi 19 juin 2013 à 20:32 -0400, Martin Reuter a écrit : > >> Hi Daniel, > >> > >> > >> bbregister is completely independent of the longitudinal stream, so if > >> it fails, it has other reasons (e.g. bad initial alignment). You could > >> try to switch the initial alignment to some other methods. > >> > >> > >> Best, Martin > >> > >> On Jun 14, 2013, at 3:25 AM, Daniel Garcia > >> <d.garcia-...@icm-institute.org> wrote: > >> > >>> Dear Freesurfer Users, > >>> > >>> I'm having a problem to register my PET images into the longitudinal > >>> pipeline of freesurfer (version 5.1). > >>> > >>> I have use bbregister without any problem to put the PET image into > >>> the > >>> crossectional images but it fails to register to the long version of > >>> it. > >>> Someone can tell me if I'm doing something wrong? > >>> > >>> bbregister -s P09_TA --mov pet_09.nii --init-fsl --reg matrix.mat > >>> --o > >>> pet2free.mgz > >>> > >>> This last command works perfectly, but > >>> > >>> bbregister -s P09_TA.long.P09 --mov pet_09.nii --init-fsl --reg > >>> matrix.mat --o pet2free.mgz > >>> > >>> Fails completely. > >>> > >>> My objective is to project my pet cortex into the surface in > >>> longitudinal that is why I'm interested in this processing. Maybe > >>> you > >>> can tell my another way of doing this. > >>> > >>> Thank you very much. > >>> > >>> Daniel > >>> > >>> > >>> > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> --------------------------------- > >> Dr. Martin Reuter > >> Assistant in Neuroscience - Massachusetts General Hospital > >> Instructor in Neurology - Harvard Medical School > >> MGH / HMS / MIT > >> > >> A.A.Martinos Center for Biomedical Imaging > >> 149 Thirteenth Street, Suite 2301 > >> Charlestown, MA 02129 > >> > >> Phone: +1-617-724-5652 > >> Email: > >> mreu...@nmr.mgh.harvard.edu > >> reu...@mit.edu > >> Web : http://reuter.mit.edu > >> > >> > >> > >> > >> The information in this e-mail is intended only for the person to whom > >> it is > >> addressed. If you believe this e-mail was sent to you in error and the > >> e-mail > >> contains patient information, please contact the Partners Compliance > >> HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to you > >> in error > >> but does not contain patient information, please contact the sender > >> and properly > >> dispose of the e-mail. > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > >
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