Which one failed? Bruce On Jun 20, 2013, at 10:29 AM, Daniel Garcia <d.garcia-...@icm-institute.org> wrote:
> Hello all, > > Thank you very much for your comments and sorry for not being too > precise with my problem before. > > It seemed at the begining to me very strange that the same image > processed in crossectional or longitudinal had different results in > registration and I thought it was something related to that more than > the initialization > > I changed the initialization and it seems to work. Thank you very much. > > Daniel > > Le mercredi 19 juin 2013 à 20:32 -0400, Martin Reuter a écrit : >> Hi Daniel, >> >> >> bbregister is completely independent of the longitudinal stream, so if >> it fails, it has other reasons (e.g. bad initial alignment). You could >> try to switch the initial alignment to some other methods. >> >> >> Best, Martin >> >> On Jun 14, 2013, at 3:25 AM, Daniel Garcia >> <d.garcia-...@icm-institute.org> wrote: >> >>> Dear Freesurfer Users, >>> >>> I'm having a problem to register my PET images into the longitudinal >>> pipeline of freesurfer (version 5.1). >>> >>> I have use bbregister without any problem to put the PET image into >>> the >>> crossectional images but it fails to register to the long version of >>> it. >>> Someone can tell me if I'm doing something wrong? >>> >>> bbregister -s P09_TA --mov pet_09.nii --init-fsl --reg matrix.mat >>> --o >>> pet2free.mgz >>> >>> This last command works perfectly, but >>> >>> bbregister -s P09_TA.long.P09 --mov pet_09.nii --init-fsl --reg >>> matrix.mat --o pet2free.mgz >>> >>> Fails completely. >>> >>> My objective is to project my pet cortex into the surface in >>> longitudinal that is why I'm interested in this processing. Maybe >>> you >>> can tell my another way of doing this. >>> >>> Thank you very much. >>> >>> Daniel >>> >>> >>> >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> --------------------------------- >> Dr. Martin Reuter >> Assistant in Neuroscience - Massachusetts General Hospital >> Instructor in Neurology - Harvard Medical School >> MGH / HMS / MIT >> >> A.A.Martinos Center for Biomedical Imaging >> 149 Thirteenth Street, Suite 2301 >> Charlestown, MA 02129 >> >> Phone: +1-617-724-5652 >> Email: >> mreu...@nmr.mgh.harvard.edu >> reu...@mit.edu >> Web : http://reuter.mit.edu >> >> >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
