Hi Jon, What is the exact command that you used for the below described conversion?
Lilla On Fri, 31 Jul 2015, Jonathan Plasencia wrote: > I've converted the aseg.mgz file to .nii (need data in nii to do some further > work on the data). However, the number of voxels for a given structure > changes when comparing the stats file (from freesurfer) to the created .nii > file. What is happening here? Is there a fix for this? I would expect the > number of > voxels for a given structure should be the same between the stats file and > the .nii file. > Note: I get the voxel values in the stats file from the NVoxels column. I get > the voxel values in the generated .nii file by using matlab to count the > number pixels with a given SegId value (i.e. given intensity value). > > > Best, > > Jon > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
