what surface did you recut it from? Can you run mris_euler_number on that surface (presumably the inflated) and also on the white/orig/pial surfaces? They should all have the same number of vertices, but I suspect some of them won't, meaning that they need to be regenerated.
cheers Bruce On Tue, 22 Mar 2016, Ji Won Bang wrote: > Dear. Freesurfer experts. > > Hi. How are you? > > I'm trying to flatten the visual cortex using the command mris_flatten > (freesurfer > version 5.3.0). > > The command line is: > mris_flatten -w 0 -distances 12 7 $SUBJECTS_DIR/$SUBJECT/surf/lh.oc.patch.3d > $SUBJECTS_DIR/$SUBJECT/surf/lh.oc.patch.flat > > The error I get is: > using write iterations = 0 > sampling 7 neighbors out to a distance of 12 mm > reading patch /home/jbang/Projects/replay/mri//replay06/surf/rh.oc.patch.3d > with > 27964 vertices (19.0% of total) > MRISreadPatch: bad vertex # (147220) found in patch file > No such file or directory > > Previously, Bruce advised me to recut it, so I deleted the lh.oc.patch.3d and > recut > it. However, freesurfer gives me the same error message... > > Could you please help me fix it? > > Thank you so much. > > Best, > Ji Won > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
