Hi, I need patient specific brain models created by warping atlases to individual MRIs. I want the model to include the Subthalamic Nucleus, Gpi, Thalamus and their surrounding organs. (Cortical segmentation is not necessary). When I use the" recon all "command on one MRI image, I get the error "cannot find mri.dcm". I have copied the MRI in Freesurfer Home directory. I really appreciate it if you can help me with that.
Thank you Dorsa Ghaffari On Mon, Jun 27, 2016 at 3:13 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Dorsa > > what specific models do you need? The 10-20 hours is to process the data > from a single subject at a single timepoint. If you check out our wiki > (http://surfer.nmr.mgh.harvard.edu/fswiki) there are lots of tutorials and > sample datasets and such > > cheers > Bruce > > On Mon, 27 Jun 2016, Dorsa Haji > Ghaffari wrote: > > > Hi, > > I am graduate student at the University of Michigan and I am performing > > research on deep brain stimulation. I want to warp an anatomical brain > atlas > > to individual patient MRIs to get the patient specific brain models out > of > > it. I chose FreeSurfer to do this and I have installed it on my > computer. I > > realized that it takes 10-20 hrs to reconstruct the image. I wanted to > ask > > if that is the time for one image? or the whole series of images? > > I also wanted to ask if there is a step by step tutorial on how to do > this. > > > > Thank you > > > > Dorsa Ghaffari > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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