Thank you! When I recon-all my files, I get the following error: files are not found to be different and cannot be sorted
Do you have any suggestions? Thank you Dorsa On Tue, Jun 28, 2016 at 12:57 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > just give recon-all a single slice from the series with -i <slice file > name>. It will figure out > > the rest of them > > On Tue, 28 Jun 2016, Dorsa Haji Ghaffari wrote: > > > Hi, > > I am a little confused about how should I save my files to execute > recon-all on > > them. I have 240 slices of dicom format and I put them in a folder in my > > subjects_dir. but I get errors when using recon-all on the folder > containing the > > MRIs. Can you help me with that? I really appreciate your help > > > > Thank you > > > > Dorsa > > > > On Mon, Jun 27, 2016 at 3:13 PM, Bruce Fischl < > fis...@nmr.mgh.harvard.edu> wrote: > > Hi Dorsa > > > > what specific models do you need? The 10-20 hours is to process the > > data > > from a single subject at a single timepoint. If you check out our > > wiki > > (http://surfer.nmr.mgh.harvard.edu/fswiki) there are lots of > > tutorials and > > sample datasets and such > > > > cheers > > Bruce > > > > On Mon, 27 Jun 2016, Dorsa Haji > > Ghaffari wrote: > > > > > Hi, > > > I am graduate student at the University of Michigan and I am > > performing > > > research on deep brain stimulation. I want to warp an anatomical > > brain atlas > > > to individual patient MRIs to get the patient specific brain > models > > out of > > > it. I chose FreeSurfer to do this and I have installed it on my > > computer. I > > > realized that it takes 10-20 hrs to reconstruct the image. I > wanted > > to ask > > > if that is the time for one image? or the whole series of images? > > > I also wanted to ask if there is a step by step tutorial on how > to > > do this. > > > > > > Thank you > > > > > > Dorsa Ghaffari > > > > > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to whom it > > is > > addressed. If you believe this e-mail was sent to you in error and the > > e-mail > > contains patient information, please contact the Partners Compliance > > HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent to you > in > > error > > but does not contain patient information, please contact the sender and > > properly > > dispose of the e-mail. > > > > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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