Hi Dorsa
you need to give us more information that that if you want us to help you.
Send us the full command line you ran and the full screen output and log
files for starters.
cheers
Bruce
On Tue, 28 Jun 2016, Dorsa Haji Ghaffari wrote:
Thank you! When I recon-all my files, I get the following error:files are
not found to be different and cannot be sorted
Do you have any suggestions?
Thank you
Dorsa
On Tue, Jun 28, 2016 at 12:57 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
just give recon-all a single slice from the series with -i
<slice file
name>. It will figure out
the rest of them
On Tue, 28 Jun 2016, Dorsa Haji Ghaffari wrote:
> Hi,
> I am a little confused about how should I save my files to
execute recon-all on
> them. I have 240 slices of dicom format and I put them in a
folder in my
> subjects_dir. but I get errors when using recon-all on the
folder containing the
> MRIs. Can you help me with that? I really appreciate your help
>
> Thank you
>
> Dorsa
>
> On Mon, Jun 27, 2016 at 3:13 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
> Hi Dorsa
>
> what specific models do you need? The 10-20 hours is to
process the
> data
> from a single subject at a single timepoint. If you
check out our
> wiki
> (http://surfer.nmr.mgh.harvard.edu/fswiki) there are
lots of
> tutorials and
> sample datasets and such
>
> cheers
> Bruce
>
> On Mon, 27 Jun 2016, Dorsa Haji
> Ghaffari wrote:
>
> > Hi,
> > I am graduate student at the University of Michigan
and I am
> performing
> > research on deep brain stimulation. I want to warp an
anatomical
> brain atlas
> > to individual patient MRIs to get the patient specific
brain models
> out of
> > it. I chose FreeSurfer to do this and I have installed
it on my
> computer. I
> > realized that it takes 10-20 hrs to reconstruct the
image. I wanted
> to ask
> > if that is the time for one image? or the whole series
of images?
> > I also wanted to ask if there is a step by step
tutorial on how to
> do this.
> >
> > Thank you
> >
> > Dorsa Ghaffari
> >
> >
> >
> >
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