Hi Bruce, How can I look at inflated.nofix as you mentioned? I think I ran recon-all for the 001.mgz without other files.
Best Regards, Aziz. On Thu, Jan 12, 2017 at 8:55 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Aziz > > yes, you ran out of RAM. That said, a defect with 66K vertices is pretty > big - more than 1/3 of a typical surface. You should check to make sure > nothing big is wrong (hemis attached, skull left around, etc....). Look at > the inflated.nofix surface and it should be obvious what the defect is > > cheers > Bruce > > On Thu, 12 Jan 2017, Aziz Nanthaamornphong wrote: > > Hi experts, >> >> I ran the command >> >> $recon-all -all -subjid 0696 >> >> I have got these error messages >> >> CORRECTING DEFECT 46 (vertices=66623, convex hull=8931) >> Excessive topologic defect encountered: could not allocate 322592700 edges >> for retessellation >> Cannot allocate memory >> >> Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu SMP Tue Apr 10 >> 20:41:14 >> UTC 2012 i686 i686 i386 GNU/Linux >> >> I am not sure if this problem came from the insufficient memory on my >> computer. Otherwise, please let me suggestions for solving this problem. >> >> Thank you, >> Aziz. >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Aziz Nanthaamornphong, Ph.D., Chair of Master of Science Program in Information Technology Department of ICT Faculty of Technology and Environment Prince of Songkla University, Phuket Campus +66 7627 6716 (v) http://research.te.psu.ac.th/aziz
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