Hi Bruce, So, I should run the freeview after got those error messages. I will try.
Thank you, Aziz. On Thu, Jan 12, 2017 at 10:32 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Aziz > > it will be in the subject's surf dir. You can visualize it via: > > freeview -f $SUBJECTS_DIR/<subject id>/surf/lh.inflated.nofix > > > > cheers > Bruce > > > On Thu, 12 Jan 2017, Aziz Nanthaamornphong wrote: > > Hi Bruce, >> How can I look at inflated.nofix as you mentioned? I think I ran recon-all >> for the 001.mgz without other files. >> >> Best Regards, >> Aziz. >> >> On Thu, Jan 12, 2017 at 8:55 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> Hi Aziz >> >> yes, you ran out of RAM. That said, a defect with 66K vertices >> is pretty big - more than 1/3 of a typical surface. You should >> check to make sure nothing big is wrong (hemis attached, skull >> left around, etc....). Look at the inflated.nofix surface and it >> should be obvious what the defect is >> >> cheers >> Bruce >> On Thu, 12 Jan 2017, Aziz Nanthaamornphong wrote: >> >> Hi experts, >> >> I ran the command >> >> $recon-all -all -subjid 0696 >> >> I have got these error messages >> >> CORRECTING DEFECT 46 (vertices=66623, convex >> hull=8931) >> Excessive topologic defect encountered: could not >> allocate 322592700 edges >> for retessellation >> Cannot allocate memory >> >> Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu >> SMP Tue Apr 10 20:41:14 >> UTC 2012 i686 i686 i386 GNU/Linux >> >> I am not sure if this problem came from the >> insufficient memory on my >> computer. Otherwise, please let me suggestions for >> solving this problem. >> >> Thank you, >> Aziz. >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom >> it is >> addressed. If you believe this e-mail was sent to you in error and the >> e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> >> -- >> >> Aziz Nanthaamornphong, Ph.D., >> Chair of Master of Science Program in Information Technology >> Department of ICT >> Faculty of Technology and Environment >> Prince of Songkla University, Phuket Campus >> +66 7627 6716 (v) >> http://research.te.psu.ac.th/aziz >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > -- Aziz Nanthaamornphong, Ph.D., Chair of Master of Science Program in Information Technology Department of ICT Faculty of Technology and Environment Prince of Songkla University, Phuket Campus +66 7627 6716 (v) http://research.te.psu.ac.th/aziz
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