Hi Aziz
it will be in the subject's surf dir. You can visualize it via:
freeview -f $SUBJECTS_DIR/<subject id>/surf/lh.inflated.nofix
cheers
Bruce
On Thu, 12
Jan 2017, Aziz Nanthaamornphong wrote:
Hi Bruce,
How can I look at inflated.nofix as you mentioned? I think I ran recon-all
for the 001.mgz without other files.
Best Regards,
Aziz.
On Thu, Jan 12, 2017 at 8:55 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Aziz
yes, you ran out of RAM. That said, a defect with 66K vertices
is pretty big - more than 1/3 of a typical surface. You should
check to make sure nothing big is wrong (hemis attached, skull
left around, etc....). Look at the inflated.nofix surface and it
should be obvious what the defect is
cheers
Bruce
On Thu, 12 Jan 2017, Aziz Nanthaamornphong wrote:
Hi experts,
I ran the command
$recon-all -all -subjid 0696
I have got these error messages
CORRECTING DEFECT 46 (vertices=66623, convex
hull=8931)
Excessive topologic defect encountered: could not
allocate 322592700 edges
for retessellation
Cannot allocate memory
Linux xubuntu-VirtualBox 3.2.0-23-generic #36-Ubuntu
SMP Tue Apr 10 20:41:14
UTC 2012 i686 i686 i386 GNU/Linux
I am not sure if this problem came from the
insufficient memory on my
computer. Otherwise, please let me suggestions for
solving this problem.
Thank you,
Aziz.
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Aziz Nanthaamornphong, Ph.D.,
Chair of Master of Science Program in Information Technology
Department of ICT
Faculty of Technology and Environment
Prince of Songkla University, Phuket Campus
+66 7627 6716 (v)
http://research.te.psu.ac.th/aziz
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