External Email - Use Caution Dear Bruce,
thanks for your response. my SUBJECTS_DIR is set to: /Users/davidemomi/Downloads/Broad_60_AV, which is actually where the output of recon-all is located. the file wm.mgz exists and is in the $SUBJECTS_DIR/mri directory Thanks again Il giorno ven 24 ago 2018 alle ore 16:49 Bruce Fischl < fis...@nmr.mgh.harvard.edu> ha scritto: > Hi Davide > > does that file exist? What is your SUBJECTS_DIR set to? > > cheers > Bruce > On Fri, 24 Aug 2018, > Davide Momi wrote: > > > > > External Email - Use Caution > > > > Dear FreeSurfer, > > > > I have a problem when I use mris_anatomical_stats. It gives me an error > saying that it couldn't read > > the input volume which is the wm.mgz file. > > would you please help me how I should fix this problem? > > this is the command which I used: > > > > mris_anatomical_stats -a label/lh.aparc.annot -b 60_AV rh > > > > computing statistics for each annotation in label/lh.aparc.annot. > > > > reading volume > /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz... > > > > mghRead(/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz, -1): > could not open file > > > > mris_anatomical_stats: could not read input volume > > /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz > > > > > > Thanks in advance > > > > > > Davide > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
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