can you run mri_info on it? And please include the full screen output
including the command line that you run as well as what it produces.
thanks
Bruce
On Fri,
24 Aug 2018, Davide Momi wrote:
External Email - Use Caution
Yes, I meant the second one and rh.aparc.annot (not lh) given that as you said
I specified rh.
As for the ls -l on wm.mgz this is the output:
-rw-------@ 1 davidemomi staff 432151 Jun 13 2017 wm.mgz
Thanks
Il giorno ven 24 ago 2018 alle ore 17:35 Bruce Fischl
<fis...@nmr.mgh.harvard.edu> ha scritto:
Hi Davide
do you mean $SUBJECTS_DIR/mri or $SUBJECTS_DIR/60_AV/mri? It should be the
latter, not the former. Also, can you send us the output of ls -l on the
wm.mgz? And finally, you probably want to use rh.aparc.annot not
lh.aparc.annot since you specified rh on the command line
cheers
Bruce
On Fri, 24 Aug 2018, Davide Momi wrote:
>
> External Email - Use Caution
>
> Dear Bruce,
>
> thanks for your response.
>
> my SUBJECTS_DIR is set to: /Users/davidemomi/Downloads/Broad_60_AV,
which is actually
where the
> output of recon-all is located.
>
> the file wm.mgz exists and is in the $SUBJECTS_DIR/mri directory
>
> Thanks again
>
>
>
>
> Il giorno ven 24 ago 2018 alle ore 16:49 Bruce Fischl
<fis...@nmr.mgh.harvard.edu> ha
scritto:
> Hi Davide
>
> does that file exist? What is your SUBJECTS_DIR set to?
>
> cheers
> Bruce
> On Fri, 24 Aug 2018,
> Davide Momi wrote:
>
> >
> > External Email - Use Caution
> >
> > Dear FreeSurfer,
> >
> > I have a problem when I use mris_anatomical_stats. It gives me
an error saying
that it
> couldn't read
> > the input volume which is the wm.mgz file.
> > would you please help me how I should fix this problem?
> > this is the command which I used:
> >
> > mris_anatomical_stats -a label/lh.aparc.annot -b 60_AV rh
> >
> > computing statistics for each annotation in
label/lh.aparc.annot.
> >
> > reading volume
/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz...
> >
> >
mghRead(/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz, -1): could
not open
> file
> >
> > mris_anatomical_stats: could not read input volume
> > /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz
> >
> >
> > Thanks in advance
> >
> >
> > Davide
> >
> >_______________________________________________
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