External Email - Use Caution Yes, I meant the second one and rh.aparc.annot (not lh) given that as you said I specified rh.
As for the ls -l on wm.mgz this is the output: -rw-------@ 1 davidemomi staff 432151 Jun 13 2017 wm.mgz Thanks Il giorno ven 24 ago 2018 alle ore 17:35 Bruce Fischl < fis...@nmr.mgh.harvard.edu> ha scritto: > Hi Davide > > do you mean $SUBJECTS_DIR/mri or $SUBJECTS_DIR/60_AV/mri? It should be the > latter, not the former. Also, can you send us the output of ls -l on the > wm.mgz? And finally, you probably want to use rh.aparc.annot not > lh.aparc.annot since you specified rh on the command line > > cheers > Bruce > > > On Fri, 24 Aug 2018, Davide Momi wrote: > > > > > External Email - Use Caution > > > > Dear Bruce, > > > > thanks for your response. > > > > my SUBJECTS_DIR is set to: /Users/davidemomi/Downloads/Broad_60_AV, > which is actually where the > > output of recon-all is located. > > > > the file wm.mgz exists and is in the $SUBJECTS_DIR/mri directory > > > > Thanks again > > > > > > > > > > Il giorno ven 24 ago 2018 alle ore 16:49 Bruce Fischl < > fis...@nmr.mgh.harvard.edu> ha scritto: > > Hi Davide > > > > does that file exist? What is your SUBJECTS_DIR set to? > > > > cheers > > Bruce > > On Fri, 24 Aug 2018, > > Davide Momi wrote: > > > > > > > > External Email - Use Caution > > > > > > Dear FreeSurfer, > > > > > > I have a problem when I use mris_anatomical_stats. It gives me > an error saying that it > > couldn't read > > > the input volume which is the wm.mgz file. > > > would you please help me how I should fix this problem? > > > this is the command which I used: > > > > > > mris_anatomical_stats -a label/lh.aparc.annot -b 60_AV rh > > > > > > computing statistics for each annotation in label/lh.aparc.annot. > > > > > > reading volume > /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz... > > > > > > > mghRead(/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz, -1): > could not open > > file > > > > > > mris_anatomical_stats: could not read input volume > > > /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz > > > > > > > > > Thanks in advance > > > > > > > > > Davide > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > The information in this e-mail is intended only for the person to > whom it is > > addressed. If you believe this e-mail was sent to you in error and > the e-mail > > contains patient information, please contact the Partners > Compliance HelpLine at > > http://www.partners.org/complianceline . If the e-mail was sent > to you in error > > but does not contain patient information, please contact the > sender and properly > > dispose of the e-mail. > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
