Hi Davide
do you mean $SUBJECTS_DIR/mri or $SUBJECTS_DIR/60_AV/mri? It should be the
latter, not the former. Also, can you send us the output of ls -l on the
wm.mgz? And finally, you probably want to use rh.aparc.annot not
lh.aparc.annot since you specified rh on the command line
cheers
Bruce
On Fri, 24 Aug 2018, Davide Momi wrote:
External Email - Use Caution
Dear Bruce,
thanks for your response.
my SUBJECTS_DIR is set to: /Users/davidemomi/Downloads/Broad_60_AV, which is
actually where the
output of recon-all is located.
the file wm.mgz exists and is in the $SUBJECTS_DIR/mri directory
Thanks again
Il giorno ven 24 ago 2018 alle ore 16:49 Bruce Fischl
<fis...@nmr.mgh.harvard.edu> ha scritto:
Hi Davide
does that file exist? What is your SUBJECTS_DIR set to?
cheers
Bruce
On Fri, 24 Aug 2018,
Davide Momi wrote:
>
> External Email - Use Caution
>
> Dear FreeSurfer,
>
> I have a problem when I use mris_anatomical_stats. It gives me an error
saying that it
couldn't read
> the input volume which is the wm.mgz file.
> would you please help me how I should fix this problem?
> this is the command which I used:
>
> mris_anatomical_stats -a label/lh.aparc.annot -b 60_AV rh
>
> computing statistics for each annotation in label/lh.aparc.annot.
>
> reading volume
/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz...
>
> mghRead(/Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz, -1):
could not open
file
>
> mris_anatomical_stats: could not read input volume
> /Users/davidemomi/Downloads/Broad_60_AV//60_AV/mri/wm.mgz
>
>
> Thanks in advance
>
>
> Davide
>
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