External Email - Use Caution Thanks for the answer Bruce.
Is For segmentations. I have run freesurfer for 100 nomal patients. I have calculated standard desviation and mean, then I am comparing the results against a patological patient. So, I would like to open freeview, for example with this command freeview -v mri/orig.mgz -f surf/lh.white:edgecolor=blue surf/lh.pial:edgecolor=red surf/rh.white:edgecolor=blue surf/rh.pial:edgecolor=red surf/rh.inflated:overlay=surf/rh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwheel,inverse:overlay=surf/rh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse:overlay=surf/rh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse surf/lh.inflated:overlay=surf/lh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwheel,inverse:overlay=surf/lh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse:overlay=surf/lh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse and show in my custom colores in segments. Emanuel On Mon, Apr 1, 2019 at 11:17 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Emanuel > > can you tell us more. For parellations or segmentations? Are you just > changing the color of existing parcels/segments? If so you can just > import it in freeview > cheers > Bruce > > On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: > > > > > External Email - Use Caution > > > > Hello! > > I would like to ask you about customs colormaps. I have created my > > own FreeSurferColorLUT.txt and I would like configure the color map > using command line. > > Is it possible? > > > > Thanks in advance. > > > > Emanuel > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
