External Email - Use Caution Thanks! Emanuel
On Mon, Apr 1, 2019 at 12:13 PM Ruopeng Wang <rpw...@nmr.mgh.harvard.edu> wrote: > Hi Emanuel, > > You can use this command to load customized color table file: > > freeview -v brain.mgz:colormap=lut:lut=color_table_file.txt > > Best, > Ruopeng > On 4/1/19 10:40 AM, Emanuel Alvaredo wrote: > > Thanks Bruce, Do you know what is the command line option? > Thanks! > Emanuel > > > On Mon, Apr 1, 2019 at 11:34 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> I see. You can give freeview a custom lookup table on the command line >> >> cheers >> Bruce >> >> >> On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: >> >> > >> > External Email - Use Caution >> > >> > Thanks for the answer Bruce. >> > Is For segmentations. I have run freesurfer for 100 nomal patients. I >> have calculated >> > standard desviation and mean, then I am comparing the results against a >> patological >> > patient. So, I would like to open freeview, for example with this >> command >> > >> > freeview -v mri/orig.mgz -f surf/lh.white:edgecolor=blue >> surf/lh.pial:edgecolor=red >> > surf/rh.white:edgecolor=blue >> > surf/rh.pial:edgecolor=red >> > >> surf/rh.inflated:overlay=surf/rh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe >> > >> el,inverse:overlay=surf/rh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: >> > >> overlay=surf/rh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse >> > >> surf/lh.inflated:overlay=surf/lh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe >> > >> el,inverse:overlay=surf/lh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: >> > >> overlay=surf/lh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse >> > >> > and show in my custom colores in segments. >> > >> > >> > >> > >> > Emanuel >> > >> > >> > On Mon, Apr 1, 2019 at 11:17 AM Bruce Fischl < >> fis...@nmr.mgh.harvard.edu> wrote: >> > Hi Emanuel >> > >> > can you tell us more. For parellations or segmentations? Are you >> just >> > changing the color of existing parcels/segments? If so you can >> just >> > import it in freeview >> > cheers >> > Bruce >> > >> > On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: >> > >> > > >> > > External Email - Use Caution >> > > >> > > Hello! >> > > I would like to ask you about customs colormaps. I have >> created my >> > > own FreeSurferColorLUT.txt and I would like configure the >> color map using >> > command line. >> > > Is it possible? >> > > >> > > Thanks in advance. >> > > >> > > Emanuel >> > > >> > >_______________________________________________ >> > Freesurfer mailing list >> > Freesurfer@nmr.mgh.harvard.edu >> > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > >> > >> >_______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing > listfreesur...@nmr.mgh.harvard.eduhttps://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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