External Email - Use Caution Thanks Bruce, Do you know what is the command line option? Thanks! Emanuel
On Mon, Apr 1, 2019 at 11:34 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > I see. You can give freeview a custom lookup table on the command line > > cheers > Bruce > > > On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: > > > > > External Email - Use Caution > > > > Thanks for the answer Bruce. > > Is For segmentations. I have run freesurfer for 100 nomal patients. I > have calculated > > standard desviation and mean, then I am comparing the results against a > patological > > patient. So, I would like to open freeview, for example with this command > > > > freeview -v mri/orig.mgz -f surf/lh.white:edgecolor=blue > surf/lh.pial:edgecolor=red > > surf/rh.white:edgecolor=blue > > surf/rh.pial:edgecolor=red > > > surf/rh.inflated:overlay=surf/rh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe > > > el,inverse:overlay=surf/rh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: > > > overlay=surf/rh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse > > > surf/lh.inflated:overlay=surf/lh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe > > > el,inverse:overlay=surf/lh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse: > > > overlay=surf/lh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse > > > > and show in my custom colores in segments. > > > > > > > > > > Emanuel > > > > > > On Mon, Apr 1, 2019 at 11:17 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > > Hi Emanuel > > > > can you tell us more. For parellations or segmentations? Are you > just > > changing the color of existing parcels/segments? If so you can just > > import it in freeview > > cheers > > Bruce > > > > On Mon, 1 Apr 2019, Emanuel Alvaredo wrote: > > > > > > > > External Email - Use Caution > > > > > > Hello! > > > I would like to ask you about customs colormaps. I have created > my > > > own FreeSurferColorLUT.txt and I would like configure the color > map using > > command line. > > > Is it possible? > > > > > > Thanks in advance. > > > > > > Emanuel > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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