I see. You can give freeview a custom lookup table on the command line
cheers
Bruce
On Mon, 1 Apr 2019, Emanuel Alvaredo wrote:
External Email - Use Caution
Thanks for the answer Bruce.
Is For segmentations. I have run freesurfer for 100 nomal patients. I have
calculated
standard desviation and mean, then I am comparing the results against a
patological
patient. So, I would like to open freeview, for example with this command
freeview -v mri/orig.mgz -f surf/lh.white:edgecolor=blue
surf/lh.pial:edgecolor=red
surf/rh.white:edgecolor=blue
surf/rh.pial:edgecolor=red
surf/rh.inflated:overlay=surf/rh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe
el,inverse:overlay=surf/rh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse:
overlay=surf/rh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse
surf/lh.inflated:overlay=surf/lh.w-g.pct.mgh:overlay_threshold=0,60:overlay_color=colorwhe
el,inverse:overlay=surf/lh.sulc:overlay_threshold=-13,13:overlay_color=colorwheel,inverse:
overlay=surf/lh.thickness:overlay_threshold=1,5:overlay_color=colorwheel,inverse
and show in my custom colores in segments.
Emanuel
On Mon, Apr 1, 2019 at 11:17 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote:
Hi Emanuel
can you tell us more. For parellations or segmentations? Are you just
changing the color of existing parcels/segments? If so you can just
import it in freeview
cheers
Bruce
On Mon, 1 Apr 2019, Emanuel Alvaredo wrote:
>
> External Email - Use Caution
>
> Hello!
> I would like to ask you about customs colormaps. I have created my
> own FreeSurferColorLUT.txt and I would like configure the color map
using
command line.
> Is it possible?
>
> Thanks in advance.
>
> Emanuel
>
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