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• [galaxy-user] question on galaxy reference genome window Sun, Wenping [USA]
  • Re: [galaxy-user] question on galaxy reference genome window Dannon Baker
  • Re: [galaxy-user] [External] Re: question on galaxy reference genome window Sun, Wenping [USA]
  • Re: [galaxy-user] [External] Re: question on galaxy reference genome window Dannon Baker
• [galaxy-user] add publicly available genomes? Camilla Nesbo
  • Re: [galaxy-user] add publicly available genomes? Jennifer Jackson
• [galaxy-user] How to Provide .gtf file to tophat2 greg
  • Re: [galaxy-user] How to Provide .gtf file to tophat2 Jennifer Jackson
  • Re: [galaxy-user] How to Provide .gtf file to tophat2 greg
• [galaxy-user] Galaxy Question D. A. Cowart
  • Re: [galaxy-user] Galaxy Question Jennifer Jackson
  • Re: [galaxy-user] Galaxy Question Jennifer Jackson
• [galaxy-user] Data library and symbolic link MONJEAUD
  • Re: [galaxy-user] Data library and symbolic link Jennifer Jackson
• [galaxy-user] Bowtie index in data libraries Anthony Bretaudeau
  • Re: [galaxy-user] Bowtie index in data libraries Jennifer Jackson
• [galaxy-user] cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) Davide Degli Esposti
  • Re: [galaxy-user] cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) Jennifer Jackson
  • Re: [galaxy-user] cufflinks analysis using .bam files generated by LifeScope (ABI 5500 Sequencer) Jennifer Jackson
• [galaxy-user] rice reference genome Jennifer Jackson
  • [galaxy-user] rice reference genome Jennifer Jackson
• [galaxy-user] How to add to add hg16 index into the build-in index / reference gnome list? Sachit Adhikari
  • Re: [galaxy-user] [galaxy-dev] How to add to add hg16 index into the build-in index / reference gnome list? Jennifer Jackson
• [galaxy-user] Searching Galaxy Tool Shed gives error Joachim Jacob
  • Re: [galaxy-user] Searching Galaxy Tool Shed gives error Greg Von Kuster
• [galaxy-user] How to add a built-in index for Tophat2? Sachit Adhikari
• [galaxy-user] Galaxy doesn't detect the file when we add dataset to a library under Manage data libraries Sachit Adhikari
• [galaxy-user] Should fastq files be merged? Karen Margrethe Jessen
  • Re: [galaxy-user] Should fastq files be merged? Jennifer Jackson
• [galaxy-user] GATK Not running Farooq,Umar (res)
  • Re: [galaxy-user] GATK Not running Philipe Moncuquet
  • Re: [galaxy-user] GATK Not running Joshua Orvis
  • Re: [galaxy-user] GATK Not running Farooq,Umar (res)
  • Re: [galaxy-user] GATK Not running Daniel Blankenberg
  • Re: [galaxy-user] GATK Not running Daniel Blankenberg
  • Re: [galaxy-user] GATK Not running Daniel Blankenberg
  • Re: [galaxy-user] GATK Not running Farooq,Umar (res)
• [galaxy-user] Link to display BED files in UCSC Genome Browser Lucy A. Skrabanek
  • Re: [galaxy-user] Link to display BED files in UCSC Genome Browser Jennifer Jackson
• [galaxy-user] Trimming and thinning of paired-end reads Alicia R . Pérez-Porro
• [galaxy-user] Downloading the gene coordinates of the rice genome maheshi dassanayake
  • Re: [galaxy-user] Downloading the gene coordinates of the rice genome Loraine, Ann
• [galaxy-user] Using -q trimming options in bwa Aung-Kyaw Chi
• [galaxy-user] Compute sum per row Joachim Jacob
  • Re: [galaxy-user] Compute sum per row Jennifer Jackson
• [galaxy-user] Tophat error. Humberto Boncristiani
  • Re: [galaxy-user] Tophat error. Jennifer Jackson
• [galaxy-user] Windows function not working shamsher jagat
  • Re: [galaxy-user] Windows function not working Jennifer Jackson
• [galaxy-user] Sliding window to get average of a seq reads shamsher jagat
  • Re: [galaxy-user] Sliding window to get average of a seq reads Jennifer Jackson
• [galaxy-user] conditional in Compute tool Ido Tamir
• [galaxy-user] User stats Nicholas Beckloff
  • Re: [galaxy-user] User stats Dave Clements
• [galaxy-user] Tophat alignment statistics? Wei Liao
  • Re: [galaxy-user] Tophat alignment statistics? Praveen Raj Somarajan
• [galaxy-user] Problem in Manage data Library Sachit Adhikari
  • Re: [galaxy-user] [galaxy-dev] Problem in Manage data Library Anthonius deBoer
• [galaxy-user] order of steps Zhiqiang Shu
  • Re: [galaxy-user] order of steps Jennifer Jackson
• [galaxy-user] NGS SAM Tools: Filter Pileup tool not working Lanelle Oni Edwards
  • Re: [galaxy-user] NGS SAM Tools: Filter Pileup tool not working Jennifer Jackson
• [galaxy-user] Trouble with KB1454chr5.bam, Bushman Chrm5, 454 data only Allan Lindh
• [galaxy-user] compare two dataset Ianiri, Giuseppe
• [galaxy-user] December 3, 2012 Distribution & News Brief Jennifer Jackson
• [galaxy-user] Barcode splitting Rajarshi Ghosh
  • Re: [galaxy-user] Barcode splitting Philipe Moncuquet
  • Re: [galaxy-user] Barcode splitting Jennifer Jackson
• [galaxy-user] how to download onto a server? Loraine, Ann
  • Re: [galaxy-user] how to download onto a server? Jennifer Jackson
• [galaxy-user] Boxplot error. 柴田 弘紀
• [galaxy-user] NGS with Arabidopsis thaliana built-in-index Tom Smith
  • Re: [galaxy-user] NGS with Arabidopsis thaliana built-in-index Jennifer Jackson
• Re: [galaxy-user] Analysis in queue but not running Dave Clements
• [galaxy-user] extracting a subset of sequences from a very large fasta file(1.5 million) Perumal Vijayan
  • Re: [galaxy-user] extracting a subset of sequences from a very large fasta file(1.5 million) Peter Cock
  • Re: [galaxy-user] extracting a subset of sequences from a very large fasta file(1.5 million) Jennifer Jackson
  • [galaxy-user] Problems with large gzipped fasta files Jim Robinson
  • Re: [galaxy-user] Problems with large gzipped fasta files Jennifer Jackson
  • Re: [galaxy-user] Problems with large gzipped fasta files Nate Coraor
  • Re: [galaxy-user] Problems with large gzipped fasta files Jim Robinson
  • Re: [galaxy-user] Problems with large gzipped fasta files Nate Coraor
  • [galaxy-user] Problem Loading History Pane Mike Dufault
  • Re: [galaxy-user] Problem Loading History Pane Nate Coraor
• [galaxy-user] December 2012 Galaxy Update Dave Clements
• [galaxy-user] "Metadata is being auto-detected" stuck in continuous loop Redvers Richard
• [galaxy-user] User's information Sachit Adhikari
  • Re: [galaxy-user] User's information Peter Cock
• [galaxy-user] Cuffdiff without gene annotation Ianiri, Giuseppe
• [galaxy-user] How good is Galaxy as a data repository and for cross-experiment querying? Yuhao
• [galaxy-user] Cuffdiff tracking file does not report all genes and trancrips from reference annotation? Wei Liao
  • Re: [galaxy-user] Cuffdiff tracking file does not report all genes and trancrips from reference annotation? Jennifer Jackson
• [galaxy-user] trim adapters and other Zhiqiang Shu
• [galaxy-user] dataset not visible Ilse Vandecandelaere
  • Re: [galaxy-user] dataset not visible Jennifer Jackson
• [galaxy-user] Data/history/user export and import Bossers, Alex
• [galaxy-user] filter for +/- 2-fold difference in expression levels Ianiri, Giuseppe
  • Re: [galaxy-user] filter for +/- 2-fold difference in expression levels Jennifer Jackson
  • Re: [galaxy-user] filter for +/- 2-fold difference in expression levels Ianiri, Giuseppe
  • Re: [galaxy-user] filter for +/- 2-fold difference in expression levels Jennifer Jackson
• [galaxy-user] Stitch Gene blocks return empty result??? 张坤山
  • Re: [galaxy-user] Stitch Gene blocks return empty result??? Jennifer Jackson
• [galaxy-user] Bismark Error: Data table named 'bismark_bs_indeces' is required by tool but not configured. Sachit Adhikari
  • Re: [galaxy-user] Bismark Error: Data table named 'bismark_bs_indeces' is required by tool but not configured. Greg Von Kuster
• [galaxy-user] History Pane empty? jason gagliano
  • Re: [galaxy-user] History Pane empty? Jennifer Jackson
  • Re: [galaxy-user] History Pane empty? Jennifer Jackson
• [galaxy-user] Clip doesn't see my FASTQ file Stephen Eacker
  • Re: [galaxy-user] Clip doesn't see my FASTQ file Jennifer Jackson
• [galaxy-user] combining two fastq files shamsher jagat
  • Re: [galaxy-user] combining two fastq files Peter Cock
  • Re: [galaxy-user] combining two fastq files Zhiqiang Shu
  • Re: [galaxy-user] combining two fastq files Jennifer Jackson
  • Re: [galaxy-user] combining two fastq files Jennifer Jackson
• [galaxy-user] Find out sense and antisense sequences Zhiqiang Shu
  • Re: [galaxy-user] Find out sense and antisense sequences Peter Cock
  • Re: [galaxy-user] Find out sense and antisense sequences Zhiqiang Shu
  • Re: [galaxy-user] Find out sense and antisense sequences Everson,Richard
  • Re: [galaxy-user] Find out sense and antisense sequences Zhiqiang Shu
  • Re: [galaxy-user] Find out sense and antisense sequences Jennifer Jackson
• [galaxy-user] Why is 'Filter pileup' not recegnising my 'Generate pileup' file? Jacqui Stockley
  • Re: [galaxy-user] Why is 'Filter pileup' not recegnising my 'Generate pileup' file? Jennifer Jackson
• [galaxy-user] BWA mapping with index file from history shamsher jagat
  • Re: [galaxy-user] BWA mapping with index file from history Jennifer Jackson
• [galaxy-user] New Galaxy CloudMan Release Enis Afgan
• [galaxy-user] Curious-- what does "You are currently viewing a deleted history!" mean? Bob Harris
• Re: [galaxy-user] Unmapped reads from tophat Ido Tamir
• [galaxy-user] Local Install - Understanding Upload File Concept greg
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept greg
  • Re: [galaxy-user] Local Install - Understanding Upload File Concept Nate Coraor
• [galaxy-user] Galaxy server configuration - what is [server:main]? greg
  • Re: [galaxy-user] Galaxy server configuration - what is [server:main]? Dannon Baker
• [galaxy-user] SNPeff on human genome David Sims
  • Re: [galaxy-user] SNPeff on human genome Jennifer Jackson
• [galaxy-user] Galaxy November 14, 2012 Distribution & News Brief Jennifer Jackson
• [galaxy-user] Downgrading toolshed tools Paul-Michael Agapow
  • Re: [galaxy-user] Downgrading toolshed tools Greg Von Kuster
• [galaxy-user] Repeated Error with Tophat Karen Sears
  • Re: [galaxy-user] Repeated Error with Tophat Jennifer Jackson
• [galaxy-user] Map with Bowtie problem [email protected]
  • Re: [galaxy-user] Map with Bowtie problem Jennifer Jackson
• [galaxy-user] stderr on Samtools sort Masaki MS
  • Re: [galaxy-user] stderr on Samtools sort Peter Cock
  • Re: [galaxy-user] stderr on Samtools sort Peter Cock
• [galaxy-user] Help to identify variants with clinical/phenotype associations Luis Santomé
  • Re: [galaxy-user] Help to identify variants with clinical/phenotype associations Jennifer Jackson
• [galaxy-user] Warning message Rolando Mantilla
  • Re: [galaxy-user] Warning message Daniel Blankenberg
• [galaxy-user] primer contamination, miranalyzer Rosie Griffiths
  • Re: [galaxy-user] primer contamination, miranalyzer Jennifer Jackson
• [galaxy-user] Unresponsive Kit Nazor
• [galaxy-user] Trouble Installing Galaxy on Cluster greg
  • Re: [galaxy-user] Trouble Installing Galaxy on Cluster Scott McManus
  • Re: [galaxy-user] Trouble Installing Galaxy on Cluster greg
  • Re: [galaxy-user] Trouble Installing Galaxy on Cluster Scott McManus
  • Re: [galaxy-user] Trouble Installing Galaxy on Cluster greg
• [galaxy-user] new_file_path setting in universe_wsgi.ini greg
• [galaxy-user] Identification of replicate outlier Dave Corney
  • Re: [galaxy-user] Identification of replicate outlier Ross
  • Re: [galaxy-user] Identification of replicate outlier Dave Corney
  • Re: [galaxy-user] Identification of replicate outlier Jeremy Goecks
• [galaxy-user] How to show sequence length data Zhiqiang Shu
  • Re: [galaxy-user] How to show sequence length data Peter Cock
• [galaxy-user] Byte-range request problem Philippe Veber
  • Re: [galaxy-user] Byte-range request problem Philippe Veber
• Re: [galaxy-user] Teaching GALAXY Dannon Baker
  • Re: [galaxy-user] Teaching GALAXY Larry Reiter
  • Re: [galaxy-user] Teaching GALAXY Tilahun Abebe
  • Re: [galaxy-user] Teaching GALAXY Dannon Baker
  • Re: [galaxy-user] Teaching GALAXY Larry Reiter
  • Re: [galaxy-user] Teaching GALAXY Dannon Baker
  • Re: [galaxy-user] Teaching GALAXY Reiter, Larry T
  • Re: [galaxy-user] Teaching GALAXY Larry Reiter
  • Re: [galaxy-user] Teaching GALAXY Dannon Baker
• [galaxy-user] Account had be deleted ? Diam Hsu
  • Re: [galaxy-user] [galaxy-dev] Account had be deleted ? Nate Coraor
• [galaxy-user] Help: determining the exon number of exonic variants Luis Santomé
• [galaxy-user] Installing Galaxy on a Cluster - What to do about Python greg
  • Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python Carlos Borroto
  • Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python greg
  • Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python Oleksandr Moskalenko
  • Re: [galaxy-user] Installing Galaxy on a Cluster - What to do about Python Carlos Borroto
• [galaxy-user] Create an index with samtools within a pipeline? Joshua Orvis
• [galaxy-user] Cluster Install - Trouble finding drmaa egg greg
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg Scott McManus
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg Scott McManus
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg greg
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg greg
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg Nate Coraor
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg greg
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg Nate Coraor
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg greg
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg Nate Coraor
  • Re: [galaxy-user] Cluster Install - Trouble finding drmaa egg Oleksandr Moskalenko

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