On Mon, January 30, 2012 16:44, Herráez Sánchez Ángel wrote:
> Hi Ted
>
> 1.
> The popup menu has an entry named "set picking"
> That should do what you want.
>
> There is a "set picking" command too. If you look up the documentation for 
> that, you can see how it works.
>
> 2.
> Given that the default is to start wirh all selected, maybe you want to 
> deselect all by including this command in your jmolApplet() call in the page:
>
> select none;
>
> I hope that's enough.
> Good luck!

Thanks Angel.
That was enough. Here is the recipe that I came up with
using your direction:

Using the menus:
1) Jmol->Main Menu->Select->Selection Halos
2) Jmol->Main Menu->Select->None
3) Jmol->Main Menu->Set picking->Select Atom

At that point the mouse click works as hoped.
Click an atom once to select, again to deselect.
The halos let me know the current selection state of each atom
and the count in parenthesis after the Select in Jmol->Main Menu
gives me a count of the number of atoms selected.



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