On Tue, Jan 03, 2017 at 04:12:28PM -0800, Otto Kratik wrote:
> On Tuesday, January 3, 2017 at 6:02:09 PM UTC-5, Marek Marczykowski-Górecki > 
> 
> > Try running `xdg-desktop-menu forceupdate`.
> 
> Ran it as su from dom0 terminal. Command was accepted, but no noticeable 
> effect or change, or output.
> 

Have you checked the menu files?

For xfce, in /etc/xdg/menus/xfce-applications.menu you should have a
<Menu> section with <Name> System that references <Directory>
qubes-System-Tools.directory
There should be an <Include> section containing <All/>
and Excludes for X-Qubes_VM and X-Xfce-Toplevel

The actual desktop files should be in /usr/share/applications: check
that they are there.
Confirm the Categories of a sample desktop file.

I can't imagine that these have been deleted - if they have then you don't
need to reinstall, just replace the missing files.

let us know what you find (or not, as the case may be).

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