rpy2-2.5.3 is now on Pypi. Try:
pip install rpy2 --upgrade
2014-12-12 12:48 GMT-05:00 Ian York <iay...@iayork.com>:
>
> For what it's worth, I noted the same bug a couple weeks ago. In case
> it didn't go through, I said:
>
> I have installed rpy2 on this machine in the past and had no problems,
> but now I am unable to get rpy2 properly installed either using pip or
> source. I'm running OSX 10.9.5 (Mavericks), and R version 3.1.1
> (2014-07-10) -- "Sock it to Me" (Platform: x86_64-apple-darwin13.1.0
> (64-bit)).
>
> Both source and pip show similar errors. For example, when I try
>
> pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>
> I get the following traceback:
>
> -------------------------------------------------
>
> Traceback (most recent call last):
> File "<string>", line 17, in <module>
> File
> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
> line 275, in <module>
> ri_ext = getRinterface_ext()
> File
> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
> line 189, in getRinterface_ext
> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
> File
> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
> line 135, in cmd_config
> output = output.strip()
> AttributeError: 'list' object has no attribute 'strip'
> -------------------------------------------------
>
> (I used https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
> because I was seeing a separate error before this, and while trying to
> find a solution to that one I saw the suggestion to use
> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz. That
> eliminated the previous error but brought in the "strip" error.)
>
> On trying to install from source (rpy2 2.5.1)
>
> I get a similar error:
> -------------------------------------------------
>
> ~/Downloads/rpy2-2.5.1 > python setup.py build install
> R version 3.1.1 (2014-07-10) -- "Sock it to Me"
> /Library/Frameworks/R.framework/Resources/bin/R CMD config --ldflags
> Traceback (most recent call last):
> File "setup.py", line 278, in <module>
> ri_ext = getRinterface_ext()
> File "setup.py", line 192, in getRinterface_ext
> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
> File "setup.py", line 135, in cmd_config
> output = output.strip()
> AttributeError: 'list' object has no attribute 'strip'
>
> -------------------------------------------------
>
> I made a guess that the offending line should be output[0].strip() but
> then I got the following error:
>
> -------------------------------------------------
>
> Traceback (most recent call last):
> File "setup.py", line 280, in <module>
> ri_ext = getRinterface_ext()
> File "setup.py", line 206, in getRinterface_ext
> include_dirs.extend(args.I)
> TypeError: 'NoneType' object is not iterable
>
> -------------------------------------------------
>
> Suggestions welcome.
>
> On Fri, Dec 12, 2014 at 12:33 PM, Laurent Gautier <lgaut...@gmail.com>
> wrote:
> > This might be a genuine bug.
> >
> > I opened an issue:
> >
> https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and
> >
> > 2014-12-12 7:21 GMT-05:00 Laurent Gautier <lgaut...@gmail.com>:
> >>
> >> Hi,
> >>
> >> This might be a bug in the install script. Consider opening an issue on
> >> bitbucket.
> >>
> >> Thanks,
> >>
> >> Laurent
> >>
> >> On Dec 12, 2014 3:57 AM, "Xinxin Peng" <fred...@gmail.com> wrote:
> >>>
> >>> Hi all,
> >>>
> >>> I have been trying to install rpy2-2.5.2 on a high performance computer
> >>> and run into the following errors:
> >>>
> >>> Traceback (most recent call last):
> >>> File "setup.py", line 275, in <module>
> >>> ri_ext = getRinterface_ext()
> >>> File "setup.py", line 189, in getRinterface_ext
> >>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
> >>> File "setup.py", line 135, in cmd_config
> >>> output = output.strip()
> >>> AttributeError: 'list' object has no attribute 'strip'
> >>>
> >>>
> >>> The python version is python2.7. And the R version is R3.1.1.
> >>>
> >>> Any suggestion is welcome.
> >>>
> >>> Thanks a lot.
> >>>
> >>> Best,
> >>> Xinxin
> >>>
> >>>
> >>>
> >>>
> >>>
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> >
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>
>
> --
> Ian York (iay...@iayork.com) <http://www.iayork.com/>
> "-but as he was a York, I am rather inclined to suppose him a
> very respectable Man." -Jane Austen, The History of England
>
>
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