Hi Laurent,
There are still errors in other place.
Traceback (most recent call last):
File "setup.py", line 283, in <module>
ri_ext = getRinterface_ext()
File "setup.py", line 203, in getRinterface_ext
warnigs.warn('No include specified')
NameError: global name 'warnigs' is not defined
Thanks,
Xinxin
On Sat, Dec 13, 2014 at 11:54 AM, Laurent Gautier <lgaut...@gmail.com>
wrote:
>
> That's an error in a different place. We are progressing....
>
> Try again:
> pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>
> 2014-12-12 22:15 GMT-05:00 Xinxin Peng <fred...@gmail.com>:
>
>> Hi Lanrent,
>>
>> Error report still exists.
>>
>> Traceback (most recent call last):
>> File "setup.py", line 280, in <module>
>> ri_ext = getRinterface_ext()
>> File "setup.py", line 202, in getRinterface_ext
>> include_dirs.extend(args.I)
>> TypeError: 'NoneType' object is not iterable
>>
>>
>> Thanks a lot.
>> Xinxin
>>
>> On Sat, Dec 13, 2014 at 10:49 AM, Laurent Gautier <lgaut...@gmail.com>
>> wrote:
>>>
>>> Typo in the fix.
>>>
>>> Try a snapshot from bitbucket:
>>>
>>> pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>>
>>>
>>> 2014-12-12 21:08 GMT-05:00 Xinxin Peng <fred...@gmail.com>:
>>>
>>>> Hi Laurent,
>>>>
>>>> The newly released package still doesn't seem to work for me.
>>>> This time I ran into different errors.
>>>>
>>>> Traceback (most recent call last):
>>>> File "setup.py", line 280, in <module>
>>>> ri_ext = getRinterface_ext()
>>>> File "setup.py", line 190, in getRinterface_ext
>>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>> File "setup.py", line 134, in cmd_config
>>>> warnings.warning("R emitting a warning: %s" % output[0])
>>>> AttributeError: 'module' object has no attribute 'warning'
>>>>
>>>> Thanks a lot.
>>>> Xinxin
>>>>
>>>>
>>>> On Sat, Dec 13, 2014 at 2:07 AM, Laurent Gautier <lgaut...@gmail.com>
>>>> wrote:
>>>>>
>>>>> rpy2-2.5.3 is now on Pypi. Try:
>>>>> pip install rpy2 --upgrade
>>>>>
>>>>> 2014-12-12 12:48 GMT-05:00 Ian York <iay...@iayork.com>:
>>>>>
>>>>>> For what it's worth, I noted the same bug a couple weeks ago. In case
>>>>>> it didn't go through, I said:
>>>>>>
>>>>>> I have installed rpy2 on this machine in the past and had no problems,
>>>>>> but now I am unable to get rpy2 properly installed either using pip or
>>>>>> source. I'm running OSX 10.9.5 (Mavericks), and R version 3.1.1
>>>>>> (2014-07-10) -- "Sock it to Me" (Platform: x86_64-apple-darwin13.1.0
>>>>>> (64-bit)).
>>>>>>
>>>>>> Both source and pip show similar errors. For example, when I try
>>>>>>
>>>>>> pip install
>>>>>> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>>>>>
>>>>>> I get the following traceback:
>>>>>>
>>>>>> -------------------------------------------------
>>>>>>
>>>>>> Traceback (most recent call last):
>>>>>> File "<string>", line 17, in <module>
>>>>>> File
>>>>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>>>>> line 275, in <module>
>>>>>> ri_ext = getRinterface_ext()
>>>>>> File
>>>>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>>>>> line 189, in getRinterface_ext
>>>>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>>>> File
>>>>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>>>>> line 135, in cmd_config
>>>>>> output = output.strip()
>>>>>> AttributeError: 'list' object has no attribute 'strip'
>>>>>> -------------------------------------------------
>>>>>>
>>>>>> (I used https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>>>>> because I was seeing a separate error before this, and while trying to
>>>>>> find a solution to that one I saw the suggestion to use
>>>>>> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz. That
>>>>>> eliminated the previous error but brought in the "strip" error.)
>>>>>>
>>>>>> On trying to install from source (rpy2 2.5.1)
>>>>>>
>>>>>> I get a similar error:
>>>>>> -------------------------------------------------
>>>>>>
>>>>>> ~/Downloads/rpy2-2.5.1 > python setup.py build install
>>>>>> R version 3.1.1 (2014-07-10) -- "Sock it to Me"
>>>>>> /Library/Frameworks/R.framework/Resources/bin/R CMD config --ldflags
>>>>>> Traceback (most recent call last):
>>>>>> File "setup.py", line 278, in <module>
>>>>>> ri_ext = getRinterface_ext()
>>>>>> File "setup.py", line 192, in getRinterface_ext
>>>>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>>>> File "setup.py", line 135, in cmd_config
>>>>>> output = output.strip()
>>>>>> AttributeError: 'list' object has no attribute 'strip'
>>>>>>
>>>>>> -------------------------------------------------
>>>>>>
>>>>>> I made a guess that the offending line should be output[0].strip() but
>>>>>> then I got the following error:
>>>>>>
>>>>>> -------------------------------------------------
>>>>>>
>>>>>> Traceback (most recent call last):
>>>>>> File "setup.py", line 280, in <module>
>>>>>> ri_ext = getRinterface_ext()
>>>>>> File "setup.py", line 206, in getRinterface_ext
>>>>>> include_dirs.extend(args.I)
>>>>>> TypeError: 'NoneType' object is not iterable
>>>>>>
>>>>>> -------------------------------------------------
>>>>>>
>>>>>> Suggestions welcome.
>>>>>>
>>>>>> On Fri, Dec 12, 2014 at 12:33 PM, Laurent Gautier <lgaut...@gmail.com>
>>>>>> wrote:
>>>>>> > This might be a genuine bug.
>>>>>> >
>>>>>> > I opened an issue:
>>>>>> >
>>>>>> https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and
>>>>>> >
>>>>>> > 2014-12-12 7:21 GMT-05:00 Laurent Gautier <lgaut...@gmail.com>:
>>>>>> >>
>>>>>> >> Hi,
>>>>>> >>
>>>>>> >> This might be a bug in the install script. Consider opening an
>>>>>> issue on
>>>>>> >> bitbucket.
>>>>>> >>
>>>>>> >> Thanks,
>>>>>> >>
>>>>>> >> Laurent
>>>>>> >>
>>>>>> >> On Dec 12, 2014 3:57 AM, "Xinxin Peng" <fred...@gmail.com> wrote:
>>>>>> >>>
>>>>>> >>> Hi all,
>>>>>> >>>
>>>>>> >>> I have been trying to install rpy2-2.5.2 on a high performance
>>>>>> computer
>>>>>> >>> and run into the following errors:
>>>>>> >>>
>>>>>> >>> Traceback (most recent call last):
>>>>>> >>> File "setup.py", line 275, in <module>
>>>>>> >>> ri_ext = getRinterface_ext()
>>>>>> >>> File "setup.py", line 189, in getRinterface_ext
>>>>>> >>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>>>> >>> File "setup.py", line 135, in cmd_config
>>>>>> >>> output = output.strip()
>>>>>> >>> AttributeError: 'list' object has no attribute 'strip'
>>>>>> >>>
>>>>>> >>>
>>>>>> >>> The python version is python2.7. And the R version is R3.1.1.
>>>>>> >>>
>>>>>> >>> Any suggestion is welcome.
>>>>>> >>>
>>>>>> >>> Thanks a lot.
>>>>>> >>>
>>>>>> >>> Best,
>>>>>> >>> Xinxin
>>>>>> >>>
>>>>>> >>>
>>>>>> >>>
>>>>>> >>>
>>>>>> >>>
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>>>>>> >
>>>>>> >
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>>>>>>
>>>>>>
>>>>>>
>>>>>> --
>>>>>> Ian York (iay...@iayork.com) <http://www.iayork.com/>
>>>>>> "-but as he was a York, I am rather inclined to suppose him a
>>>>>> very respectable Man." -Jane Austen, The History of England
>>>>>>
>>>>>>
>>>>>> ------------------------------------------------------------------------------
>>>>>> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server
>>>>>> from Actuate! Instantly Supercharge Your Business Reports and
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>>>>>>
>>>>>
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