Typo in the fix.
Try a snapshot from bitbucket:
pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
2014-12-12 21:08 GMT-05:00 Xinxin Peng <fred...@gmail.com>:
>
> Hi Laurent,
>
> The newly released package still doesn't seem to work for me.
> This time I ran into different errors.
>
> Traceback (most recent call last):
> File "setup.py", line 280, in <module>
> ri_ext = getRinterface_ext()
> File "setup.py", line 190, in getRinterface_ext
> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
> File "setup.py", line 134, in cmd_config
> warnings.warning("R emitting a warning: %s" % output[0])
> AttributeError: 'module' object has no attribute 'warning'
>
> Thanks a lot.
> Xinxin
>
>
> On Sat, Dec 13, 2014 at 2:07 AM, Laurent Gautier <lgaut...@gmail.com>
> wrote:
>>
>> rpy2-2.5.3 is now on Pypi. Try:
>> pip install rpy2 --upgrade
>>
>> 2014-12-12 12:48 GMT-05:00 Ian York <iay...@iayork.com>:
>>
>>> For what it's worth, I noted the same bug a couple weeks ago. In case
>>> it didn't go through, I said:
>>>
>>> I have installed rpy2 on this machine in the past and had no problems,
>>> but now I am unable to get rpy2 properly installed either using pip or
>>> source. I'm running OSX 10.9.5 (Mavericks), and R version 3.1.1
>>> (2014-07-10) -- "Sock it to Me" (Platform: x86_64-apple-darwin13.1.0
>>> (64-bit)).
>>>
>>> Both source and pip show similar errors. For example, when I try
>>>
>>> pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>>
>>> I get the following traceback:
>>>
>>> -------------------------------------------------
>>>
>>> Traceback (most recent call last):
>>> File "<string>", line 17, in <module>
>>> File
>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>> line 275, in <module>
>>> ri_ext = getRinterface_ext()
>>> File
>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>> line 189, in getRinterface_ext
>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>> File
>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>> line 135, in cmd_config
>>> output = output.strip()
>>> AttributeError: 'list' object has no attribute 'strip'
>>> -------------------------------------------------
>>>
>>> (I used https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>> because I was seeing a separate error before this, and while trying to
>>> find a solution to that one I saw the suggestion to use
>>> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz. That
>>> eliminated the previous error but brought in the "strip" error.)
>>>
>>> On trying to install from source (rpy2 2.5.1)
>>>
>>> I get a similar error:
>>> -------------------------------------------------
>>>
>>> ~/Downloads/rpy2-2.5.1 > python setup.py build install
>>> R version 3.1.1 (2014-07-10) -- "Sock it to Me"
>>> /Library/Frameworks/R.framework/Resources/bin/R CMD config --ldflags
>>> Traceback (most recent call last):
>>> File "setup.py", line 278, in <module>
>>> ri_ext = getRinterface_ext()
>>> File "setup.py", line 192, in getRinterface_ext
>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>> File "setup.py", line 135, in cmd_config
>>> output = output.strip()
>>> AttributeError: 'list' object has no attribute 'strip'
>>>
>>> -------------------------------------------------
>>>
>>> I made a guess that the offending line should be output[0].strip() but
>>> then I got the following error:
>>>
>>> -------------------------------------------------
>>>
>>> Traceback (most recent call last):
>>> File "setup.py", line 280, in <module>
>>> ri_ext = getRinterface_ext()
>>> File "setup.py", line 206, in getRinterface_ext
>>> include_dirs.extend(args.I)
>>> TypeError: 'NoneType' object is not iterable
>>>
>>> -------------------------------------------------
>>>
>>> Suggestions welcome.
>>>
>>> On Fri, Dec 12, 2014 at 12:33 PM, Laurent Gautier <lgaut...@gmail.com>
>>> wrote:
>>> > This might be a genuine bug.
>>> >
>>> > I opened an issue:
>>> >
>>> https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and
>>> >
>>> > 2014-12-12 7:21 GMT-05:00 Laurent Gautier <lgaut...@gmail.com>:
>>> >>
>>> >> Hi,
>>> >>
>>> >> This might be a bug in the install script. Consider opening an issue
>>> on
>>> >> bitbucket.
>>> >>
>>> >> Thanks,
>>> >>
>>> >> Laurent
>>> >>
>>> >> On Dec 12, 2014 3:57 AM, "Xinxin Peng" <fred...@gmail.com> wrote:
>>> >>>
>>> >>> Hi all,
>>> >>>
>>> >>> I have been trying to install rpy2-2.5.2 on a high performance
>>> computer
>>> >>> and run into the following errors:
>>> >>>
>>> >>> Traceback (most recent call last):
>>> >>> File "setup.py", line 275, in <module>
>>> >>> ri_ext = getRinterface_ext()
>>> >>> File "setup.py", line 189, in getRinterface_ext
>>> >>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>> >>> File "setup.py", line 135, in cmd_config
>>> >>> output = output.strip()
>>> >>> AttributeError: 'list' object has no attribute 'strip'
>>> >>>
>>> >>>
>>> >>> The python version is python2.7. And the R version is R3.1.1.
>>> >>>
>>> >>> Any suggestion is welcome.
>>> >>>
>>> >>> Thanks a lot.
>>> >>>
>>> >>> Best,
>>> >>> Xinxin
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> >>>
>>> ------------------------------------------------------------------------------
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>>> >
>>> >
>>> ------------------------------------------------------------------------------
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>>>
>>>
>>>
>>> --
>>> Ian York (iay...@iayork.com) <http://www.iayork.com/>
>>> "-but as he was a York, I am rather inclined to suppose him a
>>> very respectable Man." -Jane Austen, The History of England
>>>
>>>
>>> ------------------------------------------------------------------------------
>>> Download BIRT iHub F-Type - The Free Enterprise-Grade BIRT Server
>>> from Actuate! Instantly Supercharge Your Business Reports and Dashboards
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>>> Get technology previously reserved for billion-dollar corporations, FREE
>>>
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>>> rpy-list mailing list
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>>>
>>
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