Hi Lanrent,
Error report still exists.
Traceback (most recent call last):
File "setup.py", line 280, in <module>
ri_ext = getRinterface_ext()
File "setup.py", line 202, in getRinterface_ext
include_dirs.extend(args.I)
TypeError: 'NoneType' object is not iterable
Thanks a lot.
Xinxin
On Sat, Dec 13, 2014 at 10:49 AM, Laurent Gautier <lgaut...@gmail.com>
wrote:
>
> Typo in the fix.
>
> Try a snapshot from bitbucket:
>
> pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>
>
> 2014-12-12 21:08 GMT-05:00 Xinxin Peng <fred...@gmail.com>:
>
>> Hi Laurent,
>>
>> The newly released package still doesn't seem to work for me.
>> This time I ran into different errors.
>>
>> Traceback (most recent call last):
>> File "setup.py", line 280, in <module>
>> ri_ext = getRinterface_ext()
>> File "setup.py", line 190, in getRinterface_ext
>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>> File "setup.py", line 134, in cmd_config
>> warnings.warning("R emitting a warning: %s" % output[0])
>> AttributeError: 'module' object has no attribute 'warning'
>>
>> Thanks a lot.
>> Xinxin
>>
>>
>> On Sat, Dec 13, 2014 at 2:07 AM, Laurent Gautier <lgaut...@gmail.com>
>> wrote:
>>>
>>> rpy2-2.5.3 is now on Pypi. Try:
>>> pip install rpy2 --upgrade
>>>
>>> 2014-12-12 12:48 GMT-05:00 Ian York <iay...@iayork.com>:
>>>
>>>> For what it's worth, I noted the same bug a couple weeks ago. In case
>>>> it didn't go through, I said:
>>>>
>>>> I have installed rpy2 on this machine in the past and had no problems,
>>>> but now I am unable to get rpy2 properly installed either using pip or
>>>> source. I'm running OSX 10.9.5 (Mavericks), and R version 3.1.1
>>>> (2014-07-10) -- "Sock it to Me" (Platform: x86_64-apple-darwin13.1.0
>>>> (64-bit)).
>>>>
>>>> Both source and pip show similar errors. For example, when I try
>>>>
>>>> pip install
>>>> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>>>
>>>> I get the following traceback:
>>>>
>>>> -------------------------------------------------
>>>>
>>>> Traceback (most recent call last):
>>>> File "<string>", line 17, in <module>
>>>> File
>>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>>> line 275, in <module>
>>>> ri_ext = getRinterface_ext()
>>>> File
>>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>>> line 189, in getRinterface_ext
>>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>> File
>>>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>>>> line 135, in cmd_config
>>>> output = output.strip()
>>>> AttributeError: 'list' object has no attribute 'strip'
>>>> -------------------------------------------------
>>>>
>>>> (I used https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>>> because I was seeing a separate error before this, and while trying to
>>>> find a solution to that one I saw the suggestion to use
>>>> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz. That
>>>> eliminated the previous error but brought in the "strip" error.)
>>>>
>>>> On trying to install from source (rpy2 2.5.1)
>>>>
>>>> I get a similar error:
>>>> -------------------------------------------------
>>>>
>>>> ~/Downloads/rpy2-2.5.1 > python setup.py build install
>>>> R version 3.1.1 (2014-07-10) -- "Sock it to Me"
>>>> /Library/Frameworks/R.framework/Resources/bin/R CMD config --ldflags
>>>> Traceback (most recent call last):
>>>> File "setup.py", line 278, in <module>
>>>> ri_ext = getRinterface_ext()
>>>> File "setup.py", line 192, in getRinterface_ext
>>>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>> File "setup.py", line 135, in cmd_config
>>>> output = output.strip()
>>>> AttributeError: 'list' object has no attribute 'strip'
>>>>
>>>> -------------------------------------------------
>>>>
>>>> I made a guess that the offending line should be output[0].strip() but
>>>> then I got the following error:
>>>>
>>>> -------------------------------------------------
>>>>
>>>> Traceback (most recent call last):
>>>> File "setup.py", line 280, in <module>
>>>> ri_ext = getRinterface_ext()
>>>> File "setup.py", line 206, in getRinterface_ext
>>>> include_dirs.extend(args.I)
>>>> TypeError: 'NoneType' object is not iterable
>>>>
>>>> -------------------------------------------------
>>>>
>>>> Suggestions welcome.
>>>>
>>>> On Fri, Dec 12, 2014 at 12:33 PM, Laurent Gautier <lgaut...@gmail.com>
>>>> wrote:
>>>> > This might be a genuine bug.
>>>> >
>>>> > I opened an issue:
>>>> >
>>>> https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and
>>>> >
>>>> > 2014-12-12 7:21 GMT-05:00 Laurent Gautier <lgaut...@gmail.com>:
>>>> >>
>>>> >> Hi,
>>>> >>
>>>> >> This might be a bug in the install script. Consider opening an issue
>>>> on
>>>> >> bitbucket.
>>>> >>
>>>> >> Thanks,
>>>> >>
>>>> >> Laurent
>>>> >>
>>>> >> On Dec 12, 2014 3:57 AM, "Xinxin Peng" <fred...@gmail.com> wrote:
>>>> >>>
>>>> >>> Hi all,
>>>> >>>
>>>> >>> I have been trying to install rpy2-2.5.2 on a high performance
>>>> computer
>>>> >>> and run into the following errors:
>>>> >>>
>>>> >>> Traceback (most recent call last):
>>>> >>> File "setup.py", line 275, in <module>
>>>> >>> ri_ext = getRinterface_ext()
>>>> >>> File "setup.py", line 189, in getRinterface_ext
>>>> >>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>>>> >>> File "setup.py", line 135, in cmd_config
>>>> >>> output = output.strip()
>>>> >>> AttributeError: 'list' object has no attribute 'strip'
>>>> >>>
>>>> >>>
>>>> >>> The python version is python2.7. And the R version is R3.1.1.
>>>> >>>
>>>> >>> Any suggestion is welcome.
>>>> >>>
>>>> >>> Thanks a lot.
>>>> >>>
>>>> >>> Best,
>>>> >>> Xinxin
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>
>>>> >>>
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>>>>
>>>>
>>>> --
>>>> Ian York (iay...@iayork.com) <http://www.iayork.com/>
>>>> "-but as he was a York, I am rather inclined to suppose him a
>>>> very respectable Man." -Jane Austen, The History of England
>>>>
>>>>
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>>>
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