Hi Laurent,
The newly released package still doesn't seem to work for me.
This time I ran into different errors.
Traceback (most recent call last):
File "setup.py", line 280, in <module>
ri_ext = getRinterface_ext()
File "setup.py", line 190, in getRinterface_ext
ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
File "setup.py", line 134, in cmd_config
warnings.warning("R emitting a warning: %s" % output[0])
AttributeError: 'module' object has no attribute 'warning'
Thanks a lot.
Xinxin
On Sat, Dec 13, 2014 at 2:07 AM, Laurent Gautier <lgaut...@gmail.com> wrote:
>
> rpy2-2.5.3 is now on Pypi. Try:
> pip install rpy2 --upgrade
>
> 2014-12-12 12:48 GMT-05:00 Ian York <iay...@iayork.com>:
>
>> For what it's worth, I noted the same bug a couple weeks ago. In case
>> it didn't go through, I said:
>>
>> I have installed rpy2 on this machine in the past and had no problems,
>> but now I am unable to get rpy2 properly installed either using pip or
>> source. I'm running OSX 10.9.5 (Mavericks), and R version 3.1.1
>> (2014-07-10) -- "Sock it to Me" (Platform: x86_64-apple-darwin13.1.0
>> (64-bit)).
>>
>> Both source and pip show similar errors. For example, when I try
>>
>> pip install https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>>
>> I get the following traceback:
>>
>> -------------------------------------------------
>>
>> Traceback (most recent call last):
>> File "<string>", line 17, in <module>
>> File
>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>> line 275, in <module>
>> ri_ext = getRinterface_ext()
>> File
>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>> line 189, in getRinterface_ext
>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>> File
>> "/var/folders/7h/kxq84vrx6cq4mh8ycssjhzc4y2bpx0/T/pip-M_AK2m-build/setup.py",
>> line 135, in cmd_config
>> output = output.strip()
>> AttributeError: 'list' object has no attribute 'strip'
>> -------------------------------------------------
>>
>> (I used https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz
>> because I was seeing a separate error before this, and while trying to
>> find a solution to that one I saw the suggestion to use
>> https://bitbucket.org/lgautier/rpy2/get/version_2.5.x.tar.gz. That
>> eliminated the previous error but brought in the "strip" error.)
>>
>> On trying to install from source (rpy2 2.5.1)
>>
>> I get a similar error:
>> -------------------------------------------------
>>
>> ~/Downloads/rpy2-2.5.1 > python setup.py build install
>> R version 3.1.1 (2014-07-10) -- "Sock it to Me"
>> /Library/Frameworks/R.framework/Resources/bin/R CMD config --ldflags
>> Traceback (most recent call last):
>> File "setup.py", line 278, in <module>
>> ri_ext = getRinterface_ext()
>> File "setup.py", line 192, in getRinterface_ext
>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>> File "setup.py", line 135, in cmd_config
>> output = output.strip()
>> AttributeError: 'list' object has no attribute 'strip'
>>
>> -------------------------------------------------
>>
>> I made a guess that the offending line should be output[0].strip() but
>> then I got the following error:
>>
>> -------------------------------------------------
>>
>> Traceback (most recent call last):
>> File "setup.py", line 280, in <module>
>> ri_ext = getRinterface_ext()
>> File "setup.py", line 206, in getRinterface_ext
>> include_dirs.extend(args.I)
>> TypeError: 'NoneType' object is not iterable
>>
>> -------------------------------------------------
>>
>> Suggestions welcome.
>>
>> On Fri, Dec 12, 2014 at 12:33 PM, Laurent Gautier <lgaut...@gmail.com>
>> wrote:
>> > This might be a genuine bug.
>> >
>> > I opened an issue:
>> >
>> https://bitbucket.org/lgautier/rpy2/issue/247/error-when-getting-the-r-configuration-and
>> >
>> > 2014-12-12 7:21 GMT-05:00 Laurent Gautier <lgaut...@gmail.com>:
>> >>
>> >> Hi,
>> >>
>> >> This might be a bug in the install script. Consider opening an issue on
>> >> bitbucket.
>> >>
>> >> Thanks,
>> >>
>> >> Laurent
>> >>
>> >> On Dec 12, 2014 3:57 AM, "Xinxin Peng" <fred...@gmail.com> wrote:
>> >>>
>> >>> Hi all,
>> >>>
>> >>> I have been trying to install rpy2-2.5.2 on a high performance
>> computer
>> >>> and run into the following errors:
>> >>>
>> >>> Traceback (most recent call last):
>> >>> File "setup.py", line 275, in <module>
>> >>> ri_ext = getRinterface_ext()
>> >>> File "setup.py", line 189, in getRinterface_ext
>> >>> ldf = shlex.split(' '.join(rexec.cmd_config('--ldflags')))
>> >>> File "setup.py", line 135, in cmd_config
>> >>> output = output.strip()
>> >>> AttributeError: 'list' object has no attribute 'strip'
>> >>>
>> >>>
>> >>> The python version is python2.7. And the R version is R3.1.1.
>> >>>
>> >>> Any suggestion is welcome.
>> >>>
>> >>> Thanks a lot.
>> >>>
>> >>> Best,
>> >>> Xinxin
>> >>>
>> >>>
>> >>>
>> >>>
>> >>>
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>>
>>
>> --
>> Ian York (iay...@iayork.com) <http://www.iayork.com/>
>> "-but as he was a York, I am rather inclined to suppose him a
>> very respectable Man." -Jane Austen, The History of England
>>
>>
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