[Jmol-users] Console Question
Bob, On an iPad, the JSmol console can be displayed and used. It cannot, however be closed. Actually, none of the console buttons work, but ENTER on the iPad keyboard renders it usable. I assume I can hide the console using the document container ID. How do I address this container in order to hide it (or for that matter empty the console fields)? Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
[Jmol-users] Console Question
Bob, Is there any way I can use css to fix the CSS position of the Jmol console on my page at specific coordinates. I know how to do this, but I don’t know how to do it with the console. I’ve tried using a object containing the console per the docs. But evidently a movable absolute object inside a position fixed object does not work. Can I address the console object directly (javascript or Jquery) to place its pop-up position where I want it? Thanks for the work on spartan file charge by the way. The NATCHARGE is probably irrelevant, but my feeling is that students working with spartan should learn what spartan is producing. I know from correspondence with young model kit users that there is a sense that partial charge is some kind of atomic constant! Otis -- Otis Rothenberger o...@chemagic.org http://chemagic.org -- Check out the vibrant tech community on one of the world's most engaging tech sites, Slashdot.org! http://sdm.link/slashdot___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
you mean the "close" link on it does not work? Check the link for that --- it's what you would give as well. How can that be. Bob On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger wrote: > Bob, > > On an iPad, the JSmol console can be displayed and used. It cannot, > however be closed. Actually, none of the console buttons work, but ENTER on > the iPad keyboard renders it usable. > > I assume I can hide the console using the document container ID. How do I > address this container in order to hide it (or for that matter empty the > console fields)? > > Otis > > -- > Otis Rothenberger > o...@chemagic.com > http://chemagic.com > > > > > > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
Bob, The console comes up, but it is touch unresponsive. At first I thought it was my page, but the problem exists on: http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 This is, of course, for the iPad. I should have thought of checking the link for the code. I have it now, and I can use it to close the console with a link - better still in response to a console field enter. I have no idea why ordinary links and buttons are not responding to touch. The console, however, is functional via the keyboard. Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote: > you mean the "close" link on it does not work? Check the link for that --- > it's what you would give as well. How can that be. > > Bob > > > > On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger > wrote: > Bob, > > On an iPad, the JSmol console can be displayed and used. It cannot, however > be closed. Actually, none of the console buttons work, but ENTER on the iPad > keyboard renders it usable. > > I assume I can hide the console using the document container ID. How do I > address this container in order to hide it (or for that matter empty the > console fields)? > > Otis > > -- > Otis Rothenberger > o...@chemagic.com > http://chemagic.com > > > > > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
works great for me. What could the problem be? On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger wrote: > Bob, > > The console comes up, but it is touch unresponsive. At first I thought it > was my page, but the problem exists on: > > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 > > This is, of course, for the iPad. > > I should have thought of checking the link for the code. I have it now, > and I can use it to close the console with a link - better still in > response to a console field enter. > > I have no idea why ordinary links and buttons are not responding to touch. > The console, however, is functional via the keyboard. > > Otis > > -- > Otis Rothenberger > o...@chemagic.com > http://chemagic.com > > > > > On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote: > > you mean the "close" link on it does not work? Check the link for that --- > it's what you would give as well. How can that be. > > Bob > > > > On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger > wrote: > >> Bob, >> >> On an iPad, the JSmol console can be displayed and used. It cannot, >> however be closed. Actually, none of the console buttons work, but ENTER on >> the iPad keyboard renders it usable. >> >> I assume I can hide the console using the document container ID. How do I >> address this container in order to hide it (or for that matter empty the >> console fields)? >> >> Otis >> >> -- >> Otis Rothenberger >> o...@chemagic.com >> http://chemagic.com >> >> >> >> >> >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > > http://p.sf.net/sfu/symantec-dev2dev___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
In my experience, when a link is not responding it is because there is a element in front of it that is taking the click. I guess this is important HTML5 functionality because it allows spoofing of pages. On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson wrote: > works great for me. What could the problem be? > > > On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger > wrote: > >> Bob, >> >> The console comes up, but it is touch unresponsive. At first I thought it >> was my page, but the problem exists on: >> >> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 >> >> This is, of course, for the iPad. >> >> I should have thought of checking the link for the code. I have it now, >> and I can use it to close the console with a link - better still in >> response to a console field enter. >> >> I have no idea why ordinary links and buttons are not responding to >> touch. The console, however, is functional via the keyboard. >> >> Otis >> >> -- >> Otis Rothenberger >> o...@chemagic.com >> http://chemagic.com >> >> >> >> >> On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote: >> >> you mean the "close" link on it does not work? Check the link for that >> --- it's what you would give as well. How can that be. >> >> Bob >> >> >> >> On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger > > wrote: >> >>> Bob, >>> >>> On an iPad, the JSmol console can be displayed and used. It cannot, >>> however be closed. Actually, none of the console buttons work, but ENTER on >>> the iPad keyboard renders it usable. >>> >>> I assume I can hide the console using the document container ID. How do >>> I address this container in order to hide it (or for that matter empty the >>> console fields)? >>> >>> Otis >>> >>> -- >>> Otis Rothenberger >>> o...@chemagic.com >>> http://chemagic.com >>> >>> >>> >>> >>> >>> >>> -- >>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >>> endpoint security space. For insight on selecting the right partner to >>> tackle endpoint security challenges, access the full report. >>> http://p.sf.net/sfu/symantec-dev2dev >>> ___ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> Chair, Chemistry Department >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> >> http://p.sf.net/sfu/symantec-dev2dev___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-d
Re: [Jmol-users] Console Question
OK, now I'm really confused. Different iPads? I'm using iPad 3 - Version 6.1.2. So there's no confusion, this is an iPad issue - not a general issue. The only difference I see between: http://chemagic.com/JSmolVMK.htm (console entered in the text field) AND http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 on my iPad is that on the latter, the close link responds to a touch (flashes). This touch, however, has no response. The buttons are dead to touch on both. ?? Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Mar 8, 2013, at 10:12 AM, Robert Hanson wrote: > In my experience, when a link is not responding it is because there is a > element in front of it that is taking the click. I guess this > is important HTML5 functionality because it allows spoofing of pages. > > > > On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson wrote: > works great for me. What could the problem be? > > > On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger > wrote: > Bob, > > The console comes up, but it is touch unresponsive. At first I thought it was > my page, but the problem exists on: > > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 > > This is, of course, for the iPad. > > I should have thought of checking the link for the code. I have it now, and I > can use it to close the console with a link - better still in response to a > console field enter. > > I have no idea why ordinary links and buttons are not responding to touch. > The console, however, is functional via the keyboard. > > Otis > > -- > Otis Rothenberger > o...@chemagic.com > http://chemagic.com > > > > > On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote: > >> you mean the "close" link on it does not work? Check the link for that --- >> it's what you would give as well. How can that be. >> >> Bob >> >> >> >> On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger >> wrote: >> Bob, >> >> On an iPad, the JSmol console can be displayed and used. It cannot, however >> be closed. Actually, none of the console buttons work, but ENTER on the iPad >> keyboard renders it usable. >> >> I assume I can hide the console using the document container ID. How do I >> address this container in order to hide it (or for that matter empty the >> console fields)? >> >> Otis >> >> -- >> Otis Rothenberger >> o...@chemagic.com >> http://chemagic.com >> >> >> >> >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> Chair, Chemistry Department >> St. Olaf College >> Northfield, MN >> http://www.stolaf.edu/people/hansonr >> >> >> If nature does not answer first what we want, >> it is better to take what answer we get. >> >> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users > > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > S
Re: [Jmol-users] Console Question
I suppose there is no way on your iPad to investigate a JavaScript error. On Fri, Mar 8, 2013 at 9:47 AM, Otis Rothenberger wrote: > OK, now I'm really confused. Different iPads? I'm using iPad 3 - Version > 6.1.2. So there's no confusion, this is an iPad issue - not a general issue. > > The only difference I see between: > > http://chemagic.com/JSmolVMK.htm (console entered in the text field) > > AND > > http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 > > on my iPad is that on the latter, the close link responds to a touch > (flashes). This touch, however, has no response. The buttons are dead to > touch on both. > > ?? > > Otis > > -- > Otis Rothenberger > o...@chemagic.com > http://chemagic.com > > > On Mar 8, 2013, at 10:12 AM, Robert Hanson wrote: > > In my experience, when a link is not responding it is because there is a > element in front of it that is taking the click. I guess > this is important HTML5 functionality because it allows spoofing of pages. > > > > On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson wrote: > >> works great for me. What could the problem be? >> >> >> On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger >> wrote: >> >>> Bob, >>> >>> The console comes up, but it is touch unresponsive. At first I thought >>> it was my page, but the problem exists on: >>> >>> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 >>> >>> This is, of course, for the iPad. >>> >>> I should have thought of checking the link for the code. I have it now, >>> and I can use it to close the console with a link - better still in >>> response to a console field enter. >>> >>> I have no idea why ordinary links and buttons are not responding to >>> touch. The console, however, is functional via the keyboard. >>> >>> Otis >>> >>> -- >>> Otis Rothenberger >>> o...@chemagic.com >>> http://chemagic.com >>> >>> >>> >>> >>> On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote: >>> >>> you mean the "close" link on it does not work? Check the link for that >>> --- it's what you would give as well. How can that be. >>> >>> Bob >>> >>> >>> >>> On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger < >>> osrot...@chemagic.com> wrote: >>> Bob, On an iPad, the JSmol console can be displayed and used. It cannot, however be closed. Actually, none of the console buttons work, but ENTER on the iPad keyboard renders it usable. I assume I can hide the console using the document container ID. How do I address this container in order to hide it (or for that matter empty the console fields)? Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >>> -- >>> Robert M. Hanson >>> Larson-Anderson Professor of Chemistry >>> Chair, Chemistry Department >>> St. Olaf College >>> Northfield, MN >>> http://www.stolaf.edu/people/hansonr >>> >>> >>> If nature does not answer first what we want, >>> it is better to take what answer we get. >>> >>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 >>> >>> -- >>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >>> endpoint security space. For insight on selecting the right partner to >>> tackle endpoint security challenges, access the full report. >>> >>> http://p.sf.net/sfu/symantec-dev2dev___ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >>> >>> >>> -- >>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >>> endpoint security space. For insight on selecting the right partner to >>> tackle endpoint security challenges, access the full report. >>> http://p.sf.net/sfu/symantec-dev2dev >>> ___ >>> Jmol-users mailing list >>> Jmol-users@lists.sourceforge.net >>> https://lists.sourceforge.net/lists/listinfo/jmol-users >>> >>> >> >> >> -- >> Robert M. Hanson >> Larson-Anderson Professor of Chemistry >> Chair, Chemistry Departmen
Re: [Jmol-users] Console Question
On the iPad2 at least, go to Settings-Safari-Advanced and turn on the 'Debug console'. You should then see a debug console bar near the top of the browser. Not sure if this is available on the iPad3? Greg From: Robert Hanson [mailto:hans...@stolaf.edu] Sent: 08 March 2013 15:56 To: jmol-users@lists.sourceforge.net Subject: Re: [Jmol-users] Console Question I suppose there is no way on your iPad to investigate a JavaScript error. On Fri, Mar 8, 2013 at 9:47 AM, Otis Rothenberger mailto:osrot...@chemagic.com>> wrote: OK, now I'm really confused. Different iPads? I'm using iPad 3 - Version 6.1.2. So there's no confusion, this is an iPad issue - not a general issue. The only difference I see between: http://chemagic.com/JSmolVMK.htm (console entered in the text field) AND http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 on my iPad is that on the latter, the close link responds to a touch (flashes). This touch, however, has no response. The buttons are dead to touch on both. ?? Otis -- Otis Rothenberger o...@chemagic.com<mailto:o...@chemagic.com> http://chemagic.com On Mar 8, 2013, at 10:12 AM, Robert Hanson wrote: In my experience, when a link is not responding it is because there is a element in front of it that is taking the click. I guess this is important HTML5 functionality because it allows spoofing of pages. On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson mailto:hans...@stolaf.edu>> wrote: works great for me. What could the problem be? On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger mailto:osrot...@chemagic.com>> wrote: Bob, The console comes up, but it is touch unresponsive. At first I thought it was my page, but the problem exists on: http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5 This is, of course, for the iPad. I should have thought of checking the link for the code. I have it now, and I can use it to close the console with a link - better still in response to a console field enter. I have no idea why ordinary links and buttons are not responding to touch. The console, however, is functional via the keyboard. Otis -- Otis Rothenberger o...@chemagic.com<mailto:o...@chemagic.com> http://chemagic.com<http://chemagic.com/> On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote: you mean the "close" link on it does not work? Check the link for that --- it's what you would give as well. How can that be. Bob On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger mailto:osrot...@chemagic.com>> wrote: Bob, On an iPad, the JSmol console can be displayed and used. It cannot, however be closed. Actually, none of the console buttons work, but ENTER on the iPad keyboard renders it usable. I assume I can hide the console using the document container ID. How do I address this container in order to hide it (or for that matter empty the console fields)? Otis -- Otis Rothenberger o...@chemagic.com<mailto:o...@chemagic.com> http://chemagic.com<http://chemagic.com/> -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net<mailto:Jmol-users@lists.sourceforge.net> https://lists.sourceforge.net/lists/listinfo/jmol-users -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net<mailto:Jmol-users@lists.sourceforge.net> https://lists.sourceforge.net/lists/listinfo/jmol-users -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/s
Re: [Jmol-users] Console Question
I think perhaps you could use the search entry box like this:
*
! javascript alert("")
*
and get information about anything on the page. In this case, you might try:
! javascript alert(Jmol.Console.buttons['jmolApplet0_console'].setVisible)
Or something like that. Don't forget the exclamation point there.
On Fri, Mar 8, 2013 at 9:56 AM, Robert Hanson wrote:
> I suppose there is no way on your iPad to investigate a JavaScript error.
>
>
> On Fri, Mar 8, 2013 at 9:47 AM, Otis Rothenberger
> wrote:
>
>> OK, now I'm really confused. Different iPads? I'm using iPad 3 - Version
>> 6.1.2. So there's no confusion, this is an iPad issue - not a general issue.
>>
>> The only difference I see between:
>>
>> http://chemagic.com/JSmolVMK.htm (console entered in the text field)
>>
>> AND
>>
>> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
>>
>> on my iPad is that on the latter, the close link responds to a touch
>> (flashes). This touch, however, has no response. The buttons are dead to
>> touch on both.
>>
>> ??
>>
>> Otis
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>> http://chemagic.com
>>
>>
>> On Mar 8, 2013, at 10:12 AM, Robert Hanson wrote:
>>
>> In my experience, when a link is not responding it is because there is a
>> element in front of it that is taking the click. I guess
>> this is important HTML5 functionality because it allows spoofing of pages.
>>
>>
>>
>> On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson wrote:
>>
>>> works great for me. What could the problem be?
>>>
>>>
>>> On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger >> > wrote:
>>>
Bob,
The console comes up, but it is touch unresponsive. At first I thought
it was my page, but the problem exists on:
http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
This is, of course, for the iPad.
I should have thought of checking the link for the code. I have it now,
and I can use it to close the console with a link - better still in
response to a console field enter.
I have no idea why ordinary links and buttons are not responding to
touch. The console, however, is functional via the keyboard.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote:
you mean the "close" link on it does not work? Check the link for that
--- it's what you would give as well. How can that be.
Bob
On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger <
osrot...@chemagic.com> wrote:
> Bob,
>
> On an iPad, the JSmol console can be displayed and used. It cannot,
> however be closed. Actually, none of the console buttons work, but ENTER
> on
> the iPad keyboard renders it usable.
>
> I assume I can hide the console using the document container ID. How
> do I address this container in order to hide it (or for that matter empty
> the console fields)?
>
> Otis
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
>
>
> --
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
--
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>
Re: [Jmol-users] Console Question
Bob,
I can't get to the search box on your page because of the immovable console. On
my page with my iPad calling the alert after displaying the console results in:
function (a) {a ? this.container.show();this.container.hide();this.dragBind(a);}
This was in response to:
alert(Jmol.Console.buttons['jmolApplet0_console'].setVisible)
I follow the conditional above - not sure about this dragBind(a).
JSmol models can be touch dragged on an iPad. I'm not sure about CSS
containers, however.
My ultimate objective here was that a loaded pdb file is easiest to grab by
placing it in the console. That part works on the iPad, but the subsequent iPad
is not responsive. You can, however, copy the pdb.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Mar 8, 2013, at 11:05 AM, Robert Hanson wrote:
> I think perhaps you could use the search entry box like this:
>
> ! javascript alert("")
>
> and get information about anything on the page. In this case, you might try:
>
>
> ! javascript alert(Jmol.Console.buttons['jmolApplet0_console'].setVisible)
>
> Or something like that. Don't forget the exclamation point there.
>
>
> On Fri, Mar 8, 2013 at 9:56 AM, Robert Hanson wrote:
> I suppose there is no way on your iPad to investigate a JavaScript error.
>
>
> On Fri, Mar 8, 2013 at 9:47 AM, Otis Rothenberger
> wrote:
> OK, now I'm really confused. Different iPads? I'm using iPad 3 - Version
> 6.1.2. So there's no confusion, this is an iPad issue - not a general issue.
>
> The only difference I see between:
>
> http://chemagic.com/JSmolVMK.htm (console entered in the text field)
>
> AND
>
> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
>
> on my iPad is that on the latter, the close link responds to a touch
> (flashes). This touch, however, has no response. The buttons are dead to
> touch on both.
>
> ??
>
> Otis
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
> On Mar 8, 2013, at 10:12 AM, Robert Hanson wrote:
>
>> In my experience, when a link is not responding it is because there is a
>> element in front of it that is taking the click. I guess this
>> is important HTML5 functionality because it allows spoofing of pages.
>>
>>
>>
>> On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson wrote:
>> works great for me. What could the problem be?
>>
>>
>> On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger
>> wrote:
>> Bob,
>>
>> The console comes up, but it is touch unresponsive. At first I thought it
>> was my page, but the problem exists on:
>>
>> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
>>
>> This is, of course, for the iPad.
>>
>> I should have thought of checking the link for the code. I have it now, and
>> I can use it to close the console with a link - better still in response to
>> a console field enter.
>>
>> I have no idea why ordinary links and buttons are not responding to touch.
>> The console, however, is functional via the keyboard.
>>
>> Otis
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>> http://chemagic.com
>>
>>
>>
>>
>> On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote:
>>
>>> you mean the "close" link on it does not work? Check the link for that ---
>>> it's what you would give as well. How can that be.
>>>
>>> Bob
>>>
>>>
>>>
>>> On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger
>>> wrote:
>>> Bob,
>>>
>>> On an iPad, the JSmol console can be displayed and used. It cannot, however
>>> be closed. Actually, none of the console buttons work, but ENTER on the
>>> iPad keyboard renders it usable.
>>>
>>> I assume I can hide the console using the document container ID. How do I
>>> address this container in order to hide it (or for that matter empty the
>>> console fields)?
>>>
>>> Otis
>>>
>>> --
>>> Otis Rothenberger
>>> o...@chemagic.com
>>> http://chemagic.com
>>>
>>>
>>>
>>>
>>>
>>> --
>>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>>> endpoint security space. For insight on selecting the right partner to
>>> tackle endpoint security challenges, access the full report.
>>> http://p.sf.net/sfu/symantec-dev2dev
>>> ___
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>>
>>>
>>> --
>>> Robert M. Hanson
>>> Larson-Anderson Professor of Chemistry
>>> Chair, Chemistry Department
>>> St. Olaf College
>>> Northfield, MN
>>> http://www.stolaf.edu/people/hansonr
>>>
>>>
>>> If nature does not answer first what we want,
>>> it is better to take what answer we get.
>>>
>>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>>
>>> --
>>> Symantec Endpoi
Re: [Jmol-users] Console Question
Yes, that's the right response. This just shows that the button SHOULD run
the correct function.
"grab"?
You mean, "Get the coordinates"?
In that case, use
write PNGJ ?.png
or
write ?.zip
The resultant ZIP file will contain the original data file along with the
script.
Do we have a way of just transferring the raw data file to disk? I guess we
have load AS ... but we could also add a WRITE option that saves the
re-opens and saves the last-loaded file, I suppose.
On Fri, Mar 8, 2013 at 10:52 AM, Otis Rothenberger wrote:
> Bob,
>
> I can't get to the search box on your page because of the immovable
> console. On my page with my iPad calling the alert after displaying the
> console results in:
>
> function (a) {a ?
> this.container.show();this.container.hide();this.dragBind(a);}
>
> This was in response to:
>
> alert(Jmol.Console.buttons['jmolApplet0_console'].setVisible)
>
> I follow the conditional above - not sure about this dragBind(a).
>
> JSmol models can be touch dragged on an iPad. I'm not sure about CSS
> containers, however.
>
> My ultimate objective here was that a loaded pdb file is easiest to grab
> by placing it in the console. That part works on the iPad, but the
> subsequent iPad is not responsive. You can, however, copy the pdb.
>
> Otis
>
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
> On Mar 8, 2013, at 11:05 AM, Robert Hanson wrote:
>
> I think perhaps you could use the search entry box like this:
> *
> ! javascript alert("")
>
> *
> and get information about anything on the page. In this case, you might
> try:
>
>
> ! javascript alert(Jmol.Console.buttons['jmolApplet0_console'].setVisible)
>
> Or something like that. Don't forget the exclamation point there.
>
>
> On Fri, Mar 8, 2013 at 9:56 AM, Robert Hanson wrote:
>
>> I suppose there is no way on your iPad to investigate a JavaScript error.
>>
>>
>> On Fri, Mar 8, 2013 at 9:47 AM, Otis Rothenberger
>> wrote:
>>
>>> OK, now I'm really confused. Different iPads? I'm using iPad 3 - Version
>>> 6.1.2. So there's no confusion, this is an iPad issue - not a general issue.
>>>
>>> The only difference I see between:
>>>
>>> http://chemagic.com/JSmolVMK.htm (console entered in the text field)
>>>
>>> AND
>>>
>>> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
>>>
>>> on my iPad is that on the latter, the close link responds to a touch
>>> (flashes). This touch, however, has no response. The buttons are dead to
>>> touch on both.
>>>
>>> ??
>>>
>>> Otis
>>>
>>> --
>>> Otis Rothenberger
>>> o...@chemagic.com
>>> http://chemagic.com
>>>
>>>
>>> On Mar 8, 2013, at 10:12 AM, Robert Hanson wrote:
>>>
>>> In my experience, when a link is not responding it is because there is a
>>> element in front of it that is taking the click. I guess
>>> this is important HTML5 functionality because it allows spoofing of pages.
>>>
>>>
>>>
>>> On Fri, Mar 8, 2013 at 9:10 AM, Robert Hanson wrote:
>>>
works great for me. What could the problem be?
On Fri, Mar 8, 2013 at 8:49 AM, Otis Rothenberger <
osrot...@chemagic.com> wrote:
> Bob,
>
> The console comes up, but it is touch unresponsive. At first I thought
> it was my page, but the problem exists on:
>
> http://chemapps.stolaf.edu/jmol/jsmol/test2.htm?USE=HTML5
>
> This is, of course, for the iPad.
>
> I should have thought of checking the link for the code. I have it
> now, and I can use it to close the console with a link - better still in
> response to a console field enter.
>
> I have no idea why ordinary links and buttons are not responding to
> touch. The console, however, is functional via the keyboard.
>
> Otis
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
> On Mar 8, 2013, at 9:17 AM, Robert Hanson wrote:
>
> you mean the "close" link on it does not work? Check the link for that
> --- it's what you would give as well. How can that be.
>
> Bob
>
>
>
> On Thu, Mar 7, 2013 at 12:55 PM, Otis Rothenberger <
> osrot...@chemagic.com> wrote:
>
>> Bob,
>>
>> On an iPad, the JSmol console can be displayed and used. It cannot,
>> however be closed. Actually, none of the console buttons work, but ENTER
>> on
>> the iPad keyboard renders it usable.
>>
>> I assume I can hide the console using the document container ID. How
>> do I address this container in order to hide it (or for that matter empty
>> the console fields)?
>>
>> Otis
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>> http://chemagic.com
>>
>>
>>
>>
>>
>>
>> --
>> Symantec Endpoint Protection 12 positioned as A LEADER in The
>> Forrester
>> Wave(TM): Endpoint Security, Q1 2013 and "r
Re: [Jmol-users] Console Question
Bob,
I was working on this in response to this request from a biochemist colleague:
"It helps a lot with pdb files if you can read what they contain. It allows you
to know what kind of model you are looking at (NMR, crystallographic,
theoretical [rare, from some kind of modeling], to read warnings about
interpretation of the model (some residues disordered and not included), and to
see easily if there are HETATM groups, ions, or oddities (nonstandard residues)
in the model. Some of these things are hard to discern from the default model
that any such program presents."
So display while using the model kit is the objective. From his comments, the
header may suffice. Either way, I'm now thinking about getting it with a
message callback and putting it in what I'm now calling your Scratchpad - i.e.
setInfo showInfo.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Mar 8, 2013, at 1:34 PM, Robert Hanson wrote:
>
>
> On Fri, Mar 8, 2013 at 10:52 AM, Otis Rothenberger
> wrote:
> Bob,
>
> I can't get to the search box on your page because of the immovable console.
> On my page with my iPad calling the alert after displaying the console
> results in:
>
> function (a) {a ?
> this.container.show();this.container.hide();this.dragBind(a);}
>
> This was in response to:
>
> alert(Jmol.Console.buttons['jmolApplet0_console'].setVisible)
>
> I follow the conditional above - not sure about this dragBind(a).
>
> JSmol models can be touch dragged on an iPad. I'm not sure about CSS
> containers, however.
>
> My ultimate objective here was that a loaded pdb file is easiest to grab by
> placing it in the console. That part works on the iPad, but the subsequent
> iPad is not responsive. You can, however, copy the pdb.
>
> Otis
>
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
--
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
Otis, have you tried show PDBHEADER ? -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev ___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
Angel, No I haven't, but that's a lot easier to work with in the "sketchpad" than the whole pdb file. I'm guessing that this will suffice. If so, I'll use message call back to get it and put it in the "sketchpad." Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Mar 9, 2013, at 1:02 PM, Angel Herráez wrote: > Otis, have you tried > show PDBHEADER > ? > > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
var jsvar = Jmol.evaluate("show PDBHEADER")
On Sat, Mar 9, 2013 at 7:35 PM, Otis Rothenberger wrote:
> Angel,
>
> No I haven't, but that's a lot easier to work with in the "sketchpad" than
> the whole pdb file.
>
> I'm guessing that this will suffice. If so, I'll use message call back to
> get it and put it in the "sketchpad."
>
> Otis
>
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
>
> On Mar 9, 2013, at 1:02 PM, Angel Herráez wrote:
>
> Otis, have you tried
> show PDBHEADER
> ?
>
>
>
> --
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
--
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
var jsvar = Jmol.evaluate(jmolApplet0, "show PDBHEADER") On Sat, Mar 9, 2013 at 8:06 PM, Robert Hanson wrote: > var > > > On Sat, Mar 9, 2013 at 7:35 PM, Otis Rothenberger > wrote: > >> Angel, >> >> No I haven't, but that's a lot easier to work with in the "sketchpad" >> than the whole pdb file. >> >> I'm guessing that this will suffice. If so, I'll use message call back >> to get it and put it in the "sketchpad." >> >> Otis >> >> -- >> Otis Rothenberger >> o...@chemagic.com >> http://chemagic.com >> >> >> >> >> >> On Mar 9, 2013, at 1:02 PM, Angel Herráez wrote: >> >> Otis, have you tried >> show PDBHEADER >> ? >> >> >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> >> >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users >> >> > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- Robert M. Hanson Larson-Anderson Professor of Chemistry Chair, Chemistry Department St. Olaf College Northfield, MN http://www.stolaf.edu/people/hansonr If nature does not answer first what we want, it is better to take what answer we get. -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
Thanks Bob, for some reason I keep forgetting about Jmol.evaluate. Even though I use it all the time. I am having a problem, however. The following works: var jsvar = Jmol.evaluate(jmolApplet0, "2+2");Jmol.setInfo(jmolApplet0, jsvar, true) The following prints ERROR in the "scratchpad" (info ?) screen: var jsvar = Jmol.evaluate(jmolApplet0, "show SMILES");Jmol.setInfo(jmolApplet0, jsvar, true) I'm using "show SMILES" above, but the ERROR appears to be an issue with any show Also, it appears there may be a settable title at the top of the scratchpad with a [Jmol._Canvas2D (JSmol) "jmolApplet0"] default. Is that correct? Otis -- Otis Rothenberger o...@chemagic.com http://chemagic.com On Mar 9, 2013, at 9:06 PM, Robert Hanson wrote: > var jsvar = Jmol.evaluate(jmolApplet0, "show PDBHEADER") > > > On Sat, Mar 9, 2013 at 8:06 PM, Robert Hanson wrote: > var > > > On Sat, Mar 9, 2013 at 7:35 PM, Otis Rothenberger > wrote: > Angel, > > No I haven't, but that's a lot easier to work with in the "sketchpad" than > the whole pdb file. > > I'm guessing that this will suffice. If so, I'll use message call back to > get it and put it in the "sketchpad." > > Otis > > -- > Otis Rothenberger > o...@chemagic.com > http://chemagic.com > > > > > > On Mar 9, 2013, at 1:02 PM, Angel Herráez wrote: > >> Otis, have you tried >> show PDBHEADER >> ? >> >> >> -- >> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester >> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the >> endpoint security space. For insight on selecting the right partner to >> tackle endpoint security challenges, access the full report. >> http://p.sf.net/sfu/symantec-dev2dev >> ___ >> Jmol-users mailing list >> Jmol-users@lists.sourceforge.net >> https://lists.sourceforge.net/lists/listinfo/jmol-users > > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev > ___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > > > > -- > Robert M. Hanson > Larson-Anderson Professor of Chemistry > Chair, Chemistry Department > St. Olaf College > Northfield, MN > http://www.stolaf.edu/people/hansonr > > > If nature does not answer first what we want, > it is better to take what answer we get. > > -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900 > > -- > Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester > Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the > endpoint security space. For insight on selecting the right partner to > tackle endpoint security challenges, access the full report. > http://p.sf.net/sfu/symantec-dev2dev___ > Jmol-users mailing list > Jmol-users@lists.sourceforge.net > https://lists.sourceforge.net/lists/listinfo/jmol-users -- Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the endpoint security space. For insight on selecting the right partner to tackle endpoint security challenges, access the full report. http://p.sf.net/sfu/symantec-dev2dev___ Jmol-users mailing list Jmol-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
"show smiles" is a command. jmolEvaluate requires an *expression*
xxx = JmolEvaluate(jmolApplet0, "script('show smiles')")
Bob*
*
On Sun, Mar 10, 2013 at 10:20 AM, Otis Rothenberger
wrote:
> Thanks Bob, for some reason I keep forgetting about Jmol.evaluate. Even
> though I use it all the time.
>
> I am having a problem, however. The following works:
>
> var jsvar = Jmol.evaluate(jmolApplet0, "2+2");Jmol.setInfo(jmolApplet0,
> jsvar, true)
>
> The following prints ERROR in the "scratchpad" (info ?) screen:
>
> var jsvar = Jmol.evaluate(jmolApplet0, "show
> SMILES");Jmol.setInfo(jmolApplet0, jsvar, true)
>
> I'm using "show SMILES" above, but the ERROR appears to be an issue with
> any show
>
> Also, it appears there may be a settable title at the top of
> the scratchpad with a [Jmol._Canvas2D (JSmol) "jmolApplet0"] default. Is
> that correct?
>
> Otis
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
>
> On Mar 9, 2013, at 9:06 PM, Robert Hanson wrote:
>
> var jsvar = Jmol.evaluate(jmolApplet0, "show PDBHEADER")
>
>
> On Sat, Mar 9, 2013 at 8:06 PM, Robert Hanson wrote:
>
>> var
>>
>>
>> On Sat, Mar 9, 2013 at 7:35 PM, Otis Rothenberger
>> wrote:
>>
>>> Angel,
>>>
>>> No I haven't, but that's a lot easier to work with in the "sketchpad"
>>> than the whole pdb file.
>>>
>>> I'm guessing that this will suffice. If so, I'll use message call back
>>> to get it and put it in the "sketchpad."
>>>
>>> Otis
>>>
>>> --
>>> Otis Rothenberger
>>> o...@chemagic.com
>>> http://chemagic.com
>>>
>>>
>>>
>>>
>>>
>>> On Mar 9, 2013, at 1:02 PM, Angel Herráez wrote:
>>>
>>> Otis, have you tried
>>> show PDBHEADER
>>> ?
>>>
>>>
>>>
>>> --
>>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>>> endpoint security space. For insight on selecting the right partner to
>>> tackle endpoint security challenges, access the full report.
>>> http://p.sf.net/sfu/symantec-dev2dev
>>> ___
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>>
>>>
>>> --
>>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>>> endpoint security space. For insight on selecting the right partner to
>>> tackle endpoint security challenges, access the full report.
>>> http://p.sf.net/sfu/symantec-dev2dev
>>> ___
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>>
>>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> Chair, Chemistry Department
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>
>
> --
> Robert M. Hanson
> Larson-Anderson Professor of Chemistry
> Chair, Chemistry Department
> St. Olaf College
> Northfield, MN
> http://www.stolaf.edu/people/hansonr
>
>
> If nature does not answer first what we want,
> it is better to take what answer we get.
>
> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>
> --
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
>
> http://p.sf.net/sfu/symantec-dev2dev___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
>
>
> --
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
> endpoint security space. For insight on selecting the right partner to
> tackle endpoint security challenges, access the full report.
> http://p.sf.net/sfu/symantec-dev2dev
> ___
> Jmol-users mailing list
> Jmol-users@lists.sourceforge.net
> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
--
Robert M. Hanson
Larson-Anderson Professor of Chemistry
Chair, Chemistry Department
St. Olaf College
Northfield, MN
http://www.stolaf.edu/people/hansonr
If nature does not answer first what we want,
it is better to take what answer we get.
-- Josi
Re: [Jmol-users] Console Question
OK, beautiful. This gives my biochemist colleague everything he wanted:
var jsvar = Jmol.evaluate(jmolApplet0, "script('show
file')").replace(/(\r\n|[\r\n])/g, "");Jmol.setInfo(jmolApplet0, jsvar,
true)
Actually, it gives me access to all the "show " in the "scratchpad", or
whatever you want to call it - info pad?
Is there any way to control that "title." It retains the contents of the
previous call - i.e. number of matches.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Mar 10, 2013, at 1:49 PM, Robert Hanson wrote:
> "show smiles" is a command. jmolEvaluate requires an expression
>
> xxx = JmolEvaluate(jmolApplet0, "script('show smiles')")
>
>
> Bob
>
>
> On Sun, Mar 10, 2013 at 10:20 AM, Otis Rothenberger
> wrote:
> Thanks Bob, for some reason I keep forgetting about Jmol.evaluate. Even
> though I use it all the time.
>
> I am having a problem, however. The following works:
>
> var jsvar = Jmol.evaluate(jmolApplet0, "2+2");Jmol.setInfo(jmolApplet0,
> jsvar, true)
>
> The following prints ERROR in the "scratchpad" (info ?) screen:
>
> var jsvar = Jmol.evaluate(jmolApplet0, "show
> SMILES");Jmol.setInfo(jmolApplet0, jsvar, true)
>
> I'm using "show SMILES" above, but the ERROR appears to be an issue with any
> show
>
> Also, it appears there may be a settable title at the top of the scratchpad
> with a [Jmol._Canvas2D (JSmol) "jmolApplet0"] default. Is that correct?
>
> Otis
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
>
>
>
>
> On Mar 9, 2013, at 9:06 PM, Robert Hanson wrote:
>
>> var jsvar = Jmol.evaluate(jmolApplet0, "show PDBHEADER")
>>
>>
>> On Sat, Mar 9, 2013 at 8:06 PM, Robert Hanson wrote:
>> var
>>
>>
>> On Sat, Mar 9, 2013 at 7:35 PM, Otis Rothenberger
>> wrote:
>> Angel,
>>
>> No I haven't, but that's a lot easier to work with in the "sketchpad" than
>> the whole pdb file.
>>
>> I'm guessing that this will suffice. If so, I'll use message call back to
>> get it and put it in the "sketchpad."
>>
>> Otis
>>
>> --
>> Otis Rothenberger
>> o...@chemagic.com
>> http://chemagic.com
>>
>>
>>
>>
>>
>> On Mar 9, 2013, at 1:02 PM, Angel Herráez wrote:
>>
>>> Otis, have you tried
>>> show PDBHEADER
>>> ?
>>>
>>>
>>> --
>>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>>> endpoint security space. For insight on selecting the right partner to
>>> tackle endpoint security challenges, access the full report.
>>> http://p.sf.net/sfu/symantec-dev2dev
>>> ___
>>> Jmol-users mailing list
>>> Jmol-users@lists.sourceforge.net
>>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>> --
>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>> endpoint security space. For insight on selecting the right partner to
>> tackle endpoint security challenges, access the full report.
>> http://p.sf.net/sfu/symantec-dev2dev
>> ___
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> Chair, Chemistry Department
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>>
>>
>>
>> --
>> Robert M. Hanson
>> Larson-Anderson Professor of Chemistry
>> Chair, Chemistry Department
>> St. Olaf College
>> Northfield, MN
>> http://www.stolaf.edu/people/hansonr
>>
>>
>> If nature does not answer first what we want,
>> it is better to take what answer we get.
>>
>> -- Josiah Willard Gibbs, Lecture XXX, Monday, February 5, 1900
>>
>> --
>> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
>> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
>> endpoint security space. For insight on selecting the right partner to
>> tackle endpoint security challenges, access the full report.
>> http://p.sf.net/sfu/symantec-dev2dev___
>> Jmol-users mailing list
>> Jmol-users@lists.sourceforge.net
>> https://lists.sourceforge.net/lists/listinfo/jmol-users
>
>
> --
> Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
> Wave(TM): Endpoint Security, Q1 2013 and "remains a good choic
Re: [Jmol-users] Console Question
Bob,
OK, I found it. I have control of this with applet._infoHeader.
Otis
--
Otis Rothenberger
o...@chemagic.com
http://chemagic.com
On Mar 10, 2013, at 2:27 PM, Otis Rothenberger wrote:
> OK, beautiful. This gives my biochemist colleague everything he wanted:
>
> var jsvar = Jmol.evaluate(jmolApplet0, "script('show
> file')").replace(/(\r\n|[\r\n])/g, "");Jmol.setInfo(jmolApplet0, jsvar,
> true)
>
> Actually, it gives me access to all the "show " in the "scratchpad", or
> whatever you want to call it - info pad?
>
> Is there any way to control that "title." It retains the contents of the
> previous call - i.e. number of matches.
>
> Otis
> --
> Otis Rothenberger
> o...@chemagic.com
> http://chemagic.com
>
> On Mar 10, 2013, at 1:49 PM, Robert Hanson wrote:
>
>> "show smiles" is a command. jmolEvaluate requires an expression
>>
>> xxx = JmolEvaluate(jmolApplet0, "script('show smiles')")
>>
>>
--
Symantec Endpoint Protection 12 positioned as A LEADER in The Forrester
Wave(TM): Endpoint Security, Q1 2013 and "remains a good choice" in the
endpoint security space. For insight on selecting the right partner to
tackle endpoint security challenges, access the full report.
http://p.sf.net/sfu/symantec-dev2dev___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
Re: [Jmol-users] Console Question
Hi Otis
Not sure if I get your exact intention.
JSmol creates the automatically, at least on
first invocation,
so rather than ading that div myself, I'd try forcing its css properties.
Hav you tried a rule with !important ?
> But evidently a movable absolute object inside a position fixed object does
> not work.
This phrase is not clear to me. If it's absolute positioning, it is relative to
either the page or any parent which is positioned.
JSmol's console div is outside the body tags, so it has no parent ... I guess
the html tag will be the reference.
So let's say you add this in your page
#JmolApplet0_console {
left:800px !important;
top:8px !important;
}
What happens?
---
El software de antivirus Avast ha analizado este correo electrónico en busca de
virus.
https://www.avast.com/antivirus
--
Check out the vibrant tech community on one of the world's most
engaging tech sites, Slashdot.org! http://sdm.link/slashdot
___
Jmol-users mailing list
Jmol-users@lists.sourceforge.net
https://lists.sourceforge.net/lists/listinfo/jmol-users
