Re: Tomcat dies suddenly (was JVM goes away)

2010-01-14 Thread Carl

Yes, Slackware, version 13, 64bit.

I had done this manually (looked through each log for any evidence of a 
failure) but had not done it your automated way.  Just did your automated 
way and it found nothing (I included all the messages logs)... bummer.


The server I brought up Tuesday is using the same Slackware, Tomcat, JDK. 
This server is a Dell T105 (it was destined to be used in a smaller setting) 
which has an AMD processor instead of the Xeon.  This server is a little 
slower (the users don't notice) and has yet to have any problem.  Of course, 
the T110 ran for a week before it had a problem.


Thanks,

Carl

- Original Message - 
From: "Pid" 

To: 
Sent: Thursday, January 14, 2010 9:55 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



On 14/01/2010 14:36, Carl wrote:

David,

I am such a dufuss... didn't even notice it cycled after it finished a
test. After almost 24 hours, showing no failures. Time to call Dell.


If there's no memory hardware issue, then we're back to software.
You were on linux right?  Did you search the OS logs for evidence of an 
OOM kill?


 cat /var/log/messages | grep --ignore-case "killed process"


p



- Original Message - From: "David kerber" 
To: "Tomcat Users List" 
Sent: Thursday, January 14, 2010 8:48 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Memtest86, which I believe is the same one Peter suggested (or at
least a variation of it). It just loops continuously until stopped.



Carl wrote:

David,

What do you use for your mem testing?

I am using the memTest suggested by Peter... after six tests, it
still shows all memory is OK. Probably call Dell this morning.

TIA,

Carl

- Original Message - From: "David Kerber" 


To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 6:26 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Peter Crowther wrote:

2010/1/13 David kerber :


Make sure you let it run for quite a while. I've had memory
failures show
up as late as 11 passes into a test run.



That's dedication - I usually end up stopping it after a couple of
runs. Thanks David, I've learned something!

- Peter




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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-14 Thread Pid

On 14/01/2010 14:36, Carl wrote:

David,

I am such a dufuss... didn't even notice it cycled after it finished a
test. After almost 24 hours, showing no failures. Time to call Dell.


If there's no memory hardware issue, then we're back to software.
You were on linux right?  Did you search the OS logs for evidence of an 
OOM kill?


 cat /var/log/messages | grep --ignore-case "killed process"


p



- Original Message - From: "David kerber" 
To: "Tomcat Users List" 
Sent: Thursday, January 14, 2010 8:48 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Memtest86, which I believe is the same one Peter suggested (or at
least a variation of it). It just loops continuously until stopped.



Carl wrote:

David,

What do you use for your mem testing?

I am using the memTest suggested by Peter... after six tests, it
still shows all memory is OK. Probably call Dell this morning.

TIA,

Carl

- Original Message - From: "David Kerber" 
To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 6:26 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Peter Crowther wrote:

2010/1/13 David kerber :


Make sure you let it run for quite a while. I've had memory
failures show
up as late as 11 passes into a test run.



That's dedication - I usually end up stopping it after a couple of
runs. Thanks David, I've learned something!

- Peter




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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-14 Thread Carl

David,

I am such a dufuss... didn't even notice it cycled after it finished a test. 
After almost 24 hours, showing no failures.  Time to call Dell.


Thanks,

Carl

- Original Message - 
From: "David kerber" 

To: "Tomcat Users List" 
Sent: Thursday, January 14, 2010 8:48 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)


Memtest86, which I believe is the same one Peter suggested (or at least a 
variation of it).  It just loops continuously until stopped.




Carl wrote:

David,

What do you use for your mem testing?

I am using the memTest suggested by Peter... after six tests, it still 
shows all memory is OK.  Probably call Dell this morning.


TIA,

Carl

- Original Message - From: "David Kerber" 
To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 6:26 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Peter Crowther wrote:

2010/1/13 David kerber :

Make sure you let it run for quite a while.  I've had memory failures 
show

up as late as 11 passes into a test run.



That's dedication - I usually end up stopping it after a couple of
runs.  Thanks David, I've learned something!

- Peter

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I just start it and let it go for a day or four, until I get around to 
checking it again.  I try to get at least 24 hours of memtest testing on 
new machines, and 48 hrs on used/older ones.


D



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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-14 Thread Peter Crowther
2010/1/14 David kerber :
> Memtest86, which I believe is the same one Peter suggested (or at least a
> variation of it).  It just loops continuously until stopped.

I suggested memtest86+ (http://www.memtest.org/).  Memtest86
(http://www.memtest86.com/) is also available; I moved to the +
version when Chris Brady stopped development of the original for a
period.  The core tests are very similar, doing things like looking
for stuck bits (always 1 or always 0) or bits whose state can be
influenced by their neighbours'.

- Peter

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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-14 Thread David kerber
Memtest86, which I believe is the same one Peter suggested (or at least 
a variation of it).  It just loops continuously until stopped.




Carl wrote:

David,

What do you use for your mem testing?

I am using the memTest suggested by Peter... after six tests, it still 
shows all memory is OK.  Probably call Dell this morning.


TIA,

Carl

- Original Message - From: "David Kerber" 
To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 6:26 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Peter Crowther wrote:

2010/1/13 David kerber :

Make sure you let it run for quite a while.  I've had memory 
failures show

up as late as 11 passes into a test run.



That's dedication - I usually end up stopping it after a couple of
runs.  Thanks David, I've learned something!

- Peter

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I just start it and let it go for a day or four, until I get around to 
checking it again.  I try to get at least 24 hours of memtest testing 
on new machines, and 48 hrs on used/older ones.


D



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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-14 Thread Carl

David,

What do you use for your mem testing?

I am using the memTest suggested by Peter... after six tests, it still shows 
all memory is OK.  Probably call Dell this morning.


TIA,

Carl

- Original Message - 
From: "David Kerber" 

To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 6:26 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Peter Crowther wrote:

2010/1/13 David kerber :

Make sure you let it run for quite a while.  I've had memory failures 
show

up as late as 11 passes into a test run.



That's dedication - I usually end up stopping it after a couple of
runs.  Thanks David, I've learned something!

- Peter

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I just start it and let it go for a day or four, until I get around to 
checking it again.  I try to get at least 24 hours of memtest testing on 
new machines, and 48 hrs on used/older ones.


D



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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread David Kerber

Peter Crowther wrote:

2010/1/13 David kerber :
  

Make sure you let it run for quite a while.  I've had memory failures show
up as late as 11 passes into a test run.



That's dedication - I usually end up stopping it after a couple of
runs.  Thanks David, I've learned something!

- Peter

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I just start it and let it go for a day or four, until I get around to 
checking it again.  I try to get at least 24 hours of memtest testing on 
new machines, and 48 hrs on used/older ones.


D



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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Peter Crowther
2010/1/13 David kerber :
> Make sure you let it run for quite a while.  I've had memory failures show
> up as late as 11 passes into a test run.

That's dedication - I usually end up stopping it after a couple of
runs.  Thanks David, I've learned something!

- Peter

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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Carl

David,

Will do... thanks for the heads up.

Carl

- Original Message - 
From: "David kerber" 

To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 1:17 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



Carl wrote:

Peter,

The memTest is still running but clean so far.


Make sure you let it run for quite a while.  I've had memory failures 
show up as late as 11 passes into a test run.


D

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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread David kerber

Carl wrote:

Peter,

The memTest is still running but clean so far.


Make sure you let it run for quite a while.  I've had memory failures 
show up as late as 11 passes into a test run.


D

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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Carl

Peter,

The memTest is still running but clean so far.

Thanks,

Carl

- Original Message - 
From: "Peter Crowther" 

To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 12:00 PM
Subject: Re: Tomcat dies suddenly (was JVM goes away)


2010/1/13 Christopher Schultz :

On 1/13/2010 8:49 AM, Peter Crowther wrote:

Very difficult to know what the problem is. One thing you can now do
(as you've switched to another production server) is to run a memory
test across the "bad" server.


Usually, I would agree that physical memory problems are likely to be a
problem, but every time I've had a physical memory problem (much more
common than I'd like to admit!), the JVM has crashed in a more classic
way: that is, with an hs_log file and almost always with a SIGSEGV,
rather than this phantom thing described by Carl.

The Linux OOM killer might be a suspect, except that the process is
apparently not dying, which is very strange.


[...]

The whole thing sounds weird. :(


Oh, I agree entirely - usually something will turn a reference bad and
you'll get a memory access somewhere off in hyperspace during a GC.
But it's an easy thing to check, and there is an (admittedly small)
possibility of seeing these symptoms.  Heck, with hardware errors
there's a small probability of seeing pretty much *any* symptoms.

- Peter

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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Carl
Chris,

Carl: when the JVM "dies" and you use top to see free memory, does it
say that 2.4GB of memory is in use by a particular process,

It shows the 2.4GB as 'Used' but does not show it attached to any process 
(remember that the Tomcat process has disappeared... ps aux | grep tomcat 
yields nothing.)  My observation is that the server has 500MB 'used' when it 
starts and moves to 2.4GB after Tomcat is started.  However, the server does 
not appear to reclaim the memory after the process dies as the 'used' stays 
right at 2.4GB.  Visual LVM continues to report that the now dead Tomcat 
instance is still holding onto the memory but I am not certain whether this 
reflects some variable(s) set in Visual JVM or the actual memory something is 
still holding onto.

 or does it
just appear that the memory is not "available"? 

The 2.4GB is just shown as 'Used' by top.

If it's by a particular
process, which one? 

No process but I expected that as the Tomcat process (ps aux | grep tomcat) no 
longer exists (after the 'crash'.)

The JVM process ("/usr/bin/java" or whatever) either
does or does not exist, and if it does not exist, is it retaining
memory? 

I don't know how I could tell if the Tomcat java process/JVM was holding onto 
the memory if the process no longer exists.

If the Tomcat connectors have shut down (thereby releasing the
TCP/IP ports), but not the java process, then there should be some
indication in catalina.out 

No indication at all... just comes to a stop.  (I had a problem a while ago 
with not properly releasing database connections an I still have a good deal of 
stuff going to catalina.out (because I have been too busy to comment out the 
debugging messages.)

that the connectors have been shut down
explicitly.

The whole thing sounds weird. :(

That has been a good deal of my frustration... I thought it would leave some 
tracks somewhere.

All thoughts and ideas are appreciated.

Thanks,

Carl






- Original Message - 
From: "Christopher Schultz" 
To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 11:50 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)


> -BEGIN PGP SIGNED MESSAGE-
> Hash: SHA1
> 
> Peter,
> 
> On 1/13/2010 8:49 AM, Peter Crowther wrote:
>> Very difficult to know what the problem is.  One thing you can now do
>> (as you've switched to another production server) is to run a memory
>> test across the "bad" server.
> 
> Usually, I would agree that physical memory problems are likely to be a
> problem, but every time I've had a physical memory problem (much more
> common than I'd like to admit!), the JVM has crashed in a more classic
> way: that is, with an hs_log file and almost always with a SIGSEGV,
> rather than this phantom thing described by Carl.
> 
> The Linux OOM killer might be a suspect, except that the process is
> apparently not dying, which is very strange.
> 
> Carl: when the JVM "dies" and you use top to see free memory, does it
> say that 2.4GB of memory is in use by a particular process, or does it
> just appear that the memory is not "available"? If it's by a particular
> process, which one? The JVM process ("/usr/bin/java" or whatever) either
> does or does not exist, and if it does not exist, is it retaining
> memory? If the Tomcat connectors have shut down (thereby releasing the
> TCP/IP ports), but not the java process, then there should be some
> indication in catalina.out that the connectors have been shut down
> explicitly.
> 
> The whole thing sounds weird. :(
> 
> - -chris
> -BEGIN PGP SIGNATURE-
> Version: GnuPG v1.4.10 (MingW32)
> Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/
> 
> iEYEARECAAYFAktN+ecACgkQ9CaO5/Lv0PAZzgCgsZaU16RGcs5pgsgzgLVX7q0W
> 8xcAnRUb1Zl+0PY6+Umk8nQAEagfl/Su
> =RA9e
> -END PGP SIGNATURE-
> 
> -
> To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org
> For additional commands, e-mail: users-h...@tomcat.apache.org
> 
>

Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Peter Crowther
2010/1/13 Christopher Schultz :
> On 1/13/2010 8:49 AM, Peter Crowther wrote:
>> Very difficult to know what the problem is.  One thing you can now do
>> (as you've switched to another production server) is to run a memory
>> test across the "bad" server.
>
> Usually, I would agree that physical memory problems are likely to be a
> problem, but every time I've had a physical memory problem (much more
> common than I'd like to admit!), the JVM has crashed in a more classic
> way: that is, with an hs_log file and almost always with a SIGSEGV,
> rather than this phantom thing described by Carl.
>
> The Linux OOM killer might be a suspect, except that the process is
> apparently not dying, which is very strange.
>
[...]
> The whole thing sounds weird. :(

Oh, I agree entirely - usually something will turn a reference bad and
you'll get a memory access somewhere off in hyperspace during a GC.
But it's an easy thing to check, and there is an (admittedly small)
possibility of seeing these symptoms.  Heck, with hardware errors
there's a small probability of seeing pretty much *any* symptoms.

- Peter

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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Christopher Schultz
-BEGIN PGP SIGNED MESSAGE-
Hash: SHA1

Peter,

On 1/13/2010 8:49 AM, Peter Crowther wrote:
> Very difficult to know what the problem is.  One thing you can now do
> (as you've switched to another production server) is to run a memory
> test across the "bad" server.

Usually, I would agree that physical memory problems are likely to be a
problem, but every time I've had a physical memory problem (much more
common than I'd like to admit!), the JVM has crashed in a more classic
way: that is, with an hs_log file and almost always with a SIGSEGV,
rather than this phantom thing described by Carl.

The Linux OOM killer might be a suspect, except that the process is
apparently not dying, which is very strange.

Carl: when the JVM "dies" and you use top to see free memory, does it
say that 2.4GB of memory is in use by a particular process, or does it
just appear that the memory is not "available"? If it's by a particular
process, which one? The JVM process ("/usr/bin/java" or whatever) either
does or does not exist, and if it does not exist, is it retaining
memory? If the Tomcat connectors have shut down (thereby releasing the
TCP/IP ports), but not the java process, then there should be some
indication in catalina.out that the connectors have been shut down
explicitly.

The whole thing sounds weird. :(

- -chris
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Comment: Using GnuPG with Mozilla - http://enigmail.mozdev.org/

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8xcAnRUb1Zl+0PY6+Umk8nQAEagfl/Su
=RA9e
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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Carl
Done.  Thanks for the suggestion.  Plan to place this machine back on the 
firing line after running the memory test suggested by Peter.


Thanks,

Carl

- Original Message - 
From: "Paolo Santarsiero" 

To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 8:58 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)



In order to monitor java memory at chrash time you can add to JAVA_OPTS
these directives

-XX:+HeapDumpOnOutOfMemoryError
-XX:HeapDumpPath=/your/tomcat/folder/memorydump.hprof

In this way, if tomcat goes in out of memory, you have an image of memory
(memorydump.hprof) that you can analyze by an external application like
MemoryAnalyzer [ http://www.eclipse.org/mat/ ].

2010/1/13 Carl 


From the original posting:

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB
memory.  I have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

These are the current JAVA_OPTS="-Xms1024m -Xmx1024m -XX:PermSize=368m
-XX:MaxPermSize=368m"

In the previous posting, I noted that I have observed the memory usage 
and

general performance with Java VisualVM and have seen nothing strange.  GC
seems to be performing well and the memory rarely gets anywhere near the
max.  New information: I thought I was seeing GC as memory usage was 
going

up and down but in fact it was mostly people coming onto the system and
leaving it.  After several hours, the memory settles to a baseline of 
about
375MB.  Forced GC never takes it below that value and the ups and downs 
from
the people coming onto and leaving the system also returns it to pretty 
much

that value.  The maximum memory used never was above 700MB for the entire
day.

The server runs well, idling along at 2-5% load, except for a quick spike
during GC, serving jsp's, etc. at a reasonable speed.  Without warning 
and
with no tracks in any log (Tomcat or system) or to the console, the JVM 
will
just go away, disappear.  New information: The JVM does not just go away 
but
somehow Tomcat shutsdown as the ports used by Tomcat are closed (pointed 
out

by Konstantin.)  Sometimes, the system will run for a week, sometimes for
only several hours.  Initially, I thought the problem was the turbo or
hyperthreading but, no, the problem persists.

When Tomcat shuts down, the memory that it held is still being held (as
seen from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32 bit
Slackware, 2GB memory) for several years and, while the application will
throw exceptions now and then, it never crashed.  This lead me to believe
the problem had something to do with the 64 bit JVM but, with without 
seeing

errors anywhere, I can't be certain and don't know what I can do about it
except go back to 32 bit.

New information.

Last evening, I observed the heap and permGen memory usage with Visual 
JVM.

 It was running around 600MB before I forced a GC and 375MB afterward.
 Speed was good.  Memory usage from top was 2.4GB.  Five minutes later,
Tomcat stopped leaving no tracks that I could find.  The memory usage 
from

top was around 2.4GB.  The memory usage from Visual JVM was still showing
400MB+ although the Tomcat process was gone.  I restarted Tomcat (did not
reboot) so Tomcat had been shutdown gracefully enough to close the ports
(8080, 8443, 443.)  Tomcat stayed up for less than an hour (under light
load) and stopped again.  The memory used according to top was less than 
3GB
but I didn't get the exact number.  I restarted it again (no server 
reboot)
and it ran for the rest of the night (light load) and top was showing 
3.3GB

for memory this morning.

I brought up a new server last night and have switched to that server for
production (same Linux, JDK, server.xml, JAVA_OPTS, etc.).  It would seem 
if
the problem is with my application or the JVM, that the problem will 
follow

me to the new server.

Anyone have any ideas how I might track this problem down?

Thanks,

Carl





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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Carl

In process... thanks for the suggestion.

Carl

- Original Message - 
From: "Peter Crowther" 

To: "Tomcat Users List" 
Sent: Wednesday, January 13, 2010 8:49 AM
Subject: Re: Tomcat dies suddenly (was JVM goes away)


Very difficult to know what the problem is.  One thing you can now do
(as you've switched to another production server) is to run a memory
test across the "bad" server.  A T110 doesn't use error-correcting
memory, as I recall, so a dodgy bit could cause problems.  Give it a
couple of hours with memtest86+ and you'll at least know whether
you've been chasing phantoms due to a hardware error.

(I'm perhaps biased - I've had memory errors on three low-end servers now)

- Peter

2010/1/13 Carl :

From the original posting:

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB 
memory. I have turned off both the turbo mode and hyperthreading.


The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

These are the current 
JAVA_OPTS="-Xms1024m -Xmx1024m -XX:PermSize=368m -XX:MaxPermSize=368m"


In the previous posting, I noted that I have observed the memory usage and 
general performance with Java VisualVM and have seen nothing strange. GC 
seems to be performing well and the memory rarely gets anywhere near the 
max. New information: I thought I was seeing GC as memory usage was going 
up and down but in fact it was mostly people coming onto the system and 
leaving it. After several hours, the memory settles to a baseline of about 
375MB. Forced GC never takes it below that value and the ups and downs 
from the people coming onto and leaving the system also returns it to 
pretty much that value. The maximum memory used never was above 700MB for 
the entire day.


The server runs well, idling along at 2-5% load, except for a quick spike 
during GC, serving jsp's, etc. at a reasonable speed. Without warning and 
with no tracks in any log (Tomcat or system) or to the console, the JVM 
will just go away, disappear. New information: The JVM does not just go 
away but somehow Tomcat shutsdown as the ports used by Tomcat are closed 
(pointed out by Konstantin.) Sometimes, the system will run for a week, 
sometimes for only several hours. Initially, I thought the problem was the 
turbo or hyperthreading but, no, the problem persists.


When Tomcat shuts down, the memory that it held is still being held (as 
seen from top) but it is nowhere near the machine physical memory.


The application has been running on an older server (Dell 600SC, 32 bit 
Slackware, 2GB memory) for several years and, while the application will 
throw exceptions now and then, it never crashed. This lead me to believe 
the problem had something to do with the 64 bit JVM but, with without 
seeing errors anywhere, I can't be certain and don't know what I can do 
about it except go back to 32 bit.


New information.

Last evening, I observed the heap and permGen memory usage with Visual 
JVM. It was running around 600MB before I forced a GC and 375MB afterward. 
Speed was good. Memory usage from top was 2.4GB. Five minutes later, 
Tomcat stopped leaving no tracks that I could find. The memory usage from 
top was around 2.4GB. The memory usage from Visual JVM was still showing 
400MB+ although the Tomcat process was gone. I restarted Tomcat (did not 
reboot) so Tomcat had been shutdown gracefully enough to close the ports 
(8080, 8443, 443.) Tomcat stayed up for less than an hour (under light 
load) and stopped again. The memory used according to top was less than 
3GB but I didn't get the exact number. I restarted it again (no server 
reboot) and it ran for the rest of the night (light load) and top was 
showing 3.3GB for memory this morning.


I brought up a new server last night and have switched to that server for 
production (same Linux, JDK, server.xml, JAVA_OPTS, etc.). It would seem 
if the problem is with my application or the JVM, that the problem will 
follow me to the new server.


Anyone have any ideas how I might track this problem down?

Thanks,

Carl


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Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Paolo Santarsiero
In order to monitor java memory at chrash time you can add to JAVA_OPTS
these directives

-XX:+HeapDumpOnOutOfMemoryError
-XX:HeapDumpPath=/your/tomcat/folder/memorydump.hprof

In this way, if tomcat goes in out of memory, you have an image of memory
(memorydump.hprof) that you can analyze by an external application like
MemoryAnalyzer [ http://www.eclipse.org/mat/ ].

2010/1/13 Carl 

> From the original posting:
>
> This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB
> memory.  I have turned off both the turbo mode and hyperthreading.
>
> The environment:
>
> 64 bit Slackware Linux
>
> java version "1.6.0_17"
> Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
> Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)
>
> Tomcat: apache-tomcat-6.0.20
>
> These are the current JAVA_OPTS="-Xms1024m -Xmx1024m -XX:PermSize=368m
> -XX:MaxPermSize=368m"
>
> In the previous posting, I noted that I have observed the memory usage and
> general performance with Java VisualVM and have seen nothing strange.  GC
> seems to be performing well and the memory rarely gets anywhere near the
> max.  New information: I thought I was seeing GC as memory usage was going
> up and down but in fact it was mostly people coming onto the system and
> leaving it.  After several hours, the memory settles to a baseline of about
> 375MB.  Forced GC never takes it below that value and the ups and downs from
> the people coming onto and leaving the system also returns it to pretty much
> that value.  The maximum memory used never was above 700MB for the entire
> day.
>
> The server runs well, idling along at 2-5% load, except for a quick spike
> during GC, serving jsp's, etc. at a reasonable speed.  Without warning and
> with no tracks in any log (Tomcat or system) or to the console, the JVM will
> just go away, disappear.  New information: The JVM does not just go away but
> somehow Tomcat shutsdown as the ports used by Tomcat are closed (pointed out
> by Konstantin.)  Sometimes, the system will run for a week, sometimes for
> only several hours.  Initially, I thought the problem was the turbo or
> hyperthreading but, no, the problem persists.
>
> When Tomcat shuts down, the memory that it held is still being held (as
> seen from top) but it is nowhere near the machine physical memory.
>
> The application has been running on an older server (Dell 600SC, 32 bit
> Slackware, 2GB memory) for several years and, while the application will
> throw exceptions now and then, it never crashed.  This lead me to believe
> the problem had something to do with the 64 bit JVM but, with without seeing
> errors anywhere, I can't be certain and don't know what I can do about it
> except go back to 32 bit.
>
> New information.
>
> Last evening, I observed the heap and permGen memory usage with Visual JVM.
>  It was running around 600MB before I forced a GC and 375MB afterward.
>  Speed was good.  Memory usage from top was 2.4GB.  Five minutes later,
> Tomcat stopped leaving no tracks that I could find.  The memory usage from
> top was around 2.4GB.  The memory usage from Visual JVM was still showing
> 400MB+ although the Tomcat process was gone.  I restarted Tomcat (did not
> reboot) so Tomcat had been shutdown gracefully enough to close the ports
> (8080, 8443, 443.)  Tomcat stayed up for less than an hour (under light
> load) and stopped again.  The memory used according to top was less than 3GB
> but I didn't get the exact number.  I restarted it again (no server reboot)
> and it ran for the rest of the night (light load) and top was showing 3.3GB
> for memory this morning.
>
> I brought up a new server last night and have switched to that server for
> production (same Linux, JDK, server.xml, JAVA_OPTS, etc.).  It would seem if
> the problem is with my application or the JVM, that the problem will follow
> me to the new server.
>
> Anyone have any ideas how I might track this problem down?
>
> Thanks,
>
> Carl


Re: Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Peter Crowther
Very difficult to know what the problem is.  One thing you can now do
(as you've switched to another production server) is to run a memory
test across the "bad" server.  A T110 doesn't use error-correcting
memory, as I recall, so a dodgy bit could cause problems.  Give it a
couple of hours with memtest86+ and you'll at least know whether
you've been chasing phantoms due to a hardware error.

(I'm perhaps biased - I've had memory errors on three low-end servers now)

- Peter

2010/1/13 Carl :
> From the original posting:
>
> This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB memory.  
> I have turned off both the turbo mode and hyperthreading.
>
> The environment:
>
> 64 bit Slackware Linux
>
> java version "1.6.0_17"
> Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
> Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)
>
> Tomcat: apache-tomcat-6.0.20
>
> These are the current JAVA_OPTS="-Xms1024m -Xmx1024m -XX:PermSize=368m 
> -XX:MaxPermSize=368m"
>
> In the previous posting, I noted that I have observed the memory usage and 
> general performance with Java VisualVM and have seen nothing strange.  GC 
> seems to be performing well and the memory rarely gets anywhere near the max. 
>  New information: I thought I was seeing GC as memory usage was going up and 
> down but in fact it was mostly people coming onto the system and leaving it.  
> After several hours, the memory settles to a baseline of about 375MB.  Forced 
> GC never takes it below that value and the ups and downs from the people 
> coming onto and leaving the system also returns it to pretty much that value. 
>  The maximum memory used never was above 700MB for the entire day.
>
> The server runs well, idling along at 2-5% load, except for a quick spike 
> during GC, serving jsp's, etc. at a reasonable speed.  Without warning and 
> with no tracks in any log (Tomcat or system) or to the console, the JVM will 
> just go away, disappear.  New information: The JVM does not just go away but 
> somehow Tomcat shutsdown as the ports used by Tomcat are closed (pointed out 
> by Konstantin.)  Sometimes, the system will run for a week, sometimes for 
> only several hours.  Initially, I thought the problem was the turbo or 
> hyperthreading but, no, the problem persists.
>
> When Tomcat shuts down, the memory that it held is still being held (as seen 
> from top) but it is nowhere near the machine physical memory.
>
> The application has been running on an older server (Dell 600SC, 32 bit 
> Slackware, 2GB memory) for several years and, while the application will 
> throw exceptions now and then, it never crashed.  This lead me to believe the 
> problem had something to do with the 64 bit JVM but, with without seeing 
> errors anywhere, I can't be certain and don't know what I can do about it 
> except go back to 32 bit.
>
> New information.
>
> Last evening, I observed the heap and permGen memory usage with Visual JVM.  
> It was running around 600MB before I forced a GC and 375MB afterward.  Speed 
> was good.  Memory usage from top was 2.4GB.  Five minutes later, Tomcat 
> stopped leaving no tracks that I could find.  The memory usage from top was 
> around 2.4GB.  The memory usage from Visual JVM was still showing 400MB+ 
> although the Tomcat process was gone.  I restarted Tomcat (did not reboot) so 
> Tomcat had been shutdown gracefully enough to close the ports (8080, 8443, 
> 443.)  Tomcat stayed up for less than an hour (under light load) and stopped 
> again.  The memory used according to top was less than 3GB but I didn't get 
> the exact number.  I restarted it again (no server reboot) and it ran for the 
> rest of the night (light load) and top was showing 3.3GB for memory this 
> morning.
>
> I brought up a new server last night and have switched to that server for 
> production (same Linux, JDK, server.xml, JAVA_OPTS, etc.).  It would seem if 
> the problem is with my application or the JVM, that the problem will follow 
> me to the new server.
>
> Anyone have any ideas how I might track this problem down?
>
> Thanks,
>
> Carl

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Tomcat dies suddenly (was JVM goes away)

2010-01-13 Thread Carl
>From the original posting:

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB memory.  I 
have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

These are the current JAVA_OPTS="-Xms1024m -Xmx1024m -XX:PermSize=368m 
-XX:MaxPermSize=368m"

In the previous posting, I noted that I have observed the memory usage and 
general performance with Java VisualVM and have seen nothing strange.  GC seems 
to be performing well and the memory rarely gets anywhere near the max.  New 
information: I thought I was seeing GC as memory usage was going up and down 
but in fact it was mostly people coming onto the system and leaving it.  After 
several hours, the memory settles to a baseline of about 375MB.  Forced GC 
never takes it below that value and the ups and downs from the people coming 
onto and leaving the system also returns it to pretty much that value.  The 
maximum memory used never was above 700MB for the entire day.

The server runs well, idling along at 2-5% load, except for a quick spike 
during GC, serving jsp's, etc. at a reasonable speed.  Without warning and with 
no tracks in any log (Tomcat or system) or to the console, the JVM will just go 
away, disappear.  New information: The JVM does not just go away but somehow 
Tomcat shutsdown as the ports used by Tomcat are closed (pointed out by 
Konstantin.)  Sometimes, the system will run for a week, sometimes for only 
several hours.  Initially, I thought the problem was the turbo or 
hyperthreading but, no, the problem persists.

When Tomcat shuts down, the memory that it held is still being held (as seen 
from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32 bit 
Slackware, 2GB memory) for several years and, while the application will throw 
exceptions now and then, it never crashed.  This lead me to believe the problem 
had something to do with the 64 bit JVM but, with without seeing errors 
anywhere, I can't be certain and don't know what I can do about it except go 
back to 32 bit.

New information.  

Last evening, I observed the heap and permGen memory usage with Visual JVM.  It 
was running around 600MB before I forced a GC and 375MB afterward.  Speed was 
good.  Memory usage from top was 2.4GB.  Five minutes later, Tomcat stopped 
leaving no tracks that I could find.  The memory usage from top was around 
2.4GB.  The memory usage from Visual JVM was still showing 400MB+ although the 
Tomcat process was gone.  I restarted Tomcat (did not reboot) so Tomcat had 
been shutdown gracefully enough to close the ports (8080, 8443, 443.)  Tomcat 
stayed up for less than an hour (under light load) and stopped again.  The 
memory used according to top was less than 3GB but I didn't get the exact 
number.  I restarted it again (no server reboot) and it ran for the rest of the 
night (light load) and top was showing 3.3GB for memory this morning.

I brought up a new server last night and have switched to that server for 
production (same Linux, JDK, server.xml, JAVA_OPTS, etc.).  It would seem if 
the problem is with my application or the JVM, that the problem will follow me 
to the new server.

Anyone have any ideas how I might track this problem down?

Thanks,

Carl

Re: JVM goes away

2010-01-12 Thread Carl
One more reason why we use this much memory: we run 2-4 contexts most of the 
time.  This was originally done to separate certain customer data while 
keeping the code base the same and to allow us to have a test environment 
exactly like the production environment.  If each context requires 50-60MB 
for perm gen, then the Tomcat perm gen is upwards of 256MB.  Also, if each 
context requires 200-300MB of heap, then we could require upwards heap of 
500-700MB (allowing for GC, timing, etc.)  I have probably allocated more 
heap memory than needed (due to my faulty understanding that the heap 
constrained perm gen, etc.)


Thanks,

Carl

- Original Message - 
From: "Pid" 

To: "Carl" 
Sent: Tuesday, January 12, 2010 4:41 AM
Subject: Re: JVM goes away



On 12/01/2010 01:30, Carl wrote:

Aha, for some reason, I thought perm gen was included in the general
heap so the maximum for the two combined was constrained by the 2400m I
had defined for the heap. Somewhere around 2:00AM (I am US east coast),
I can restart the server with the new settings.

I have taken several heap dumps (using Visual JVM) and nothing looked
odd. Also, I can see (from Visual JVM) that the GC runs reasonably
frequently when the heap grows (from users working) but the total heap
is generally under 1GB. I wonder if the sneaky little bugger, under
load, just pushes to OOM and I am running so close to the edge that I
don't see it. Odd though, I have forced OOM issues in the past and they
always showed up in catalina.out.


Does your app actually need all that memory?


p



Thanks for your thoughts and help.

Carl

- Original Message - From: "Pid" 
To: 
Sent: Monday, January 11, 2010 8:07 PM
Subject: Re: JVM goes away



On 11/01/2010 23:06, Peter Crowther wrote:

2010/1/11 Carl:

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB
memory. I have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance
with Java VisualVM and have seen nothing strange. GC seems to be
performing well and the memory rarely gets anywhere near the max.

The server runs well, idling along at 2-5% load, serving jsp's, etc.
at a reasonable speed. Without warning and with no tracks in any log
(Tomcat or system) or to the console, the JVM will just go away,
disappear. Sometimes, the system will run for a week, sometimes for
only several hours. Initially, I thought the problem was the turbo
or hyperthreading but, no, the problem persists.

When the JVM goes away, the memory that it held is still being held
(as seen from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32
bit Slackware, 2GB memory) for several years and, while the
application will throw exceptions now and then, it never crashed the
JVM. This leads me to believe the problem has something to do with
the 64 bit JVM but, with errors, I can't be certain and don't know
what I can do about it except go back to 32 bit.

I plan to reinstall Java tonight but, it would seem if the JVM were
corrupted, it simply would not run.

Any ideas are welcome.


I'm with Andy: the Linux OOM killer would show those symptoms. With
those settings, you're not leaving a lot of memory for the OS. How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter


Despite later posts, I'm leaning towards agreeing with the above,
based on the information provided.

N.B. Maximum heap size does not equal the maximum memory a JVM
can/will use.

The Perm generation is in addition to the heap so you're effectively
saying that the memory you want to use is 2400 + 512 (+ other stuff
falling into the non-heap category).

So you may be using more than 3Gb; jmap -heap  will provide more
information, you could regularly dump the output to file to see what's
happening with the JVM.

http://java.sun.com/javase/6/docs/technotes/guides/management/jconsole.html


(Confession: I'm not sure I've got my head round it yet)



An OOM should leave a trace somewhere on your system, it might be a
single log entry saying that a given process id has been terminated.

Google for specific info for your OS.


p




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Re: JVM goes away

2010-01-12 Thread Carl
Perhaps not the best design but basically, yes.  We have stored a fair 
amount of information in memory (session) to try to improve the speed  of 
the application (so we don't go back to the disk as often.)  At some point 
(probably never happen) I would like to take a look at the balance between 
storing information in session and the penalty for disk access but, like 
most people, just too busy right now.  So, I have tried to cover this up 
with (relatively) cheap memory.


Thanks for your thoughts.

Carl

- Original Message - 
From: "Pid" 

To: "Carl" 
Sent: Tuesday, January 12, 2010 4:41 AM
Subject: Re: JVM goes away



On 12/01/2010 01:30, Carl wrote:

Aha, for some reason, I thought perm gen was included in the general
heap so the maximum for the two combined was constrained by the 2400m I
had defined for the heap. Somewhere around 2:00AM (I am US east coast),
I can restart the server with the new settings.

I have taken several heap dumps (using Visual JVM) and nothing looked
odd. Also, I can see (from Visual JVM) that the GC runs reasonably
frequently when the heap grows (from users working) but the total heap
is generally under 1GB. I wonder if the sneaky little bugger, under
load, just pushes to OOM and I am running so close to the edge that I
don't see it. Odd though, I have forced OOM issues in the past and they
always showed up in catalina.out.


Does your app actually need all that memory?


p



Thanks for your thoughts and help.

Carl

- Original Message - From: "Pid" 
To: 
Sent: Monday, January 11, 2010 8:07 PM
Subject: Re: JVM goes away



On 11/01/2010 23:06, Peter Crowther wrote:

2010/1/11 Carl:

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB
memory. I have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance
with Java VisualVM and have seen nothing strange. GC seems to be
performing well and the memory rarely gets anywhere near the max.

The server runs well, idling along at 2-5% load, serving jsp's, etc.
at a reasonable speed. Without warning and with no tracks in any log
(Tomcat or system) or to the console, the JVM will just go away,
disappear. Sometimes, the system will run for a week, sometimes for
only several hours. Initially, I thought the problem was the turbo
or hyperthreading but, no, the problem persists.

When the JVM goes away, the memory that it held is still being held
(as seen from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32
bit Slackware, 2GB memory) for several years and, while the
application will throw exceptions now and then, it never crashed the
JVM. This leads me to believe the problem has something to do with
the 64 bit JVM but, with errors, I can't be certain and don't know
what I can do about it except go back to 32 bit.

I plan to reinstall Java tonight but, it would seem if the JVM were
corrupted, it simply would not run.

Any ideas are welcome.


I'm with Andy: the Linux OOM killer would show those symptoms. With
those settings, you're not leaving a lot of memory for the OS. How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter


Despite later posts, I'm leaning towards agreeing with the above,
based on the information provided.

N.B. Maximum heap size does not equal the maximum memory a JVM
can/will use.

The Perm generation is in addition to the heap so you're effectively
saying that the memory you want to use is 2400 + 512 (+ other stuff
falling into the non-heap category).

So you may be using more than 3Gb; jmap -heap  will provide more
information, you could regularly dump the output to file to see what's
happening with the JVM.

http://java.sun.com/javase/6/docs/technotes/guides/management/jconsole.html


(Confession: I'm not sure I've got my head round it yet)



An OOM should leave a trace somewhere on your system, it might be a
single log entry saying that a given process id has been terminated.

Google for specific info for your OS.


p




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Re: JVM goes away

2010-01-11 Thread Carl
Aha, for some reason, I thought perm gen was included in the general heap so 
the maximum for the two combined was constrained by the 2400m I had defined 
for the heap.  Somewhere around 2:00AM (I am US east coast), I can restart 
the server with the new settings.


I have taken several heap dumps (using Visual JVM) and nothing looked odd. 
Also, I can see (from Visual JVM) that the GC runs reasonably frequently 
when the heap grows (from users working) but the total heap is generally 
under 1GB.  I wonder if the sneaky little bugger, under load, just pushes to 
OOM and I am running so close to the edge that I don't see it.  Odd though, 
I have forced OOM issues in the past and they always showed up in 
catalina.out.


Thanks for your thoughts and help.

Carl

- Original Message - 
From: "Pid" 

To: 
Sent: Monday, January 11, 2010 8:07 PM
Subject: Re: JVM goes away



On 11/01/2010 23:06, Peter Crowther wrote:

2010/1/11 Carl:
This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB 
memory.  I have turned off both the turbo mode and hyperthreading.


The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance with 
Java VisualVM and have seen nothing strange.  GC seems to be performing 
well and the memory rarely gets anywhere near the max.


The server runs well, idling along at 2-5% load, serving jsp's, etc. at 
a reasonable speed.  Without warning and with no tracks in any log 
(Tomcat or system) or to the console, the JVM will just go away, 
disappear.  Sometimes, the system will run for a week, sometimes for 
only several hours.  Initially, I thought the problem was the turbo or 
hyperthreading but, no, the problem persists.


When the JVM goes away, the memory that it held is still being held (as 
seen from top) but it is nowhere near the machine physical memory.


The application has been running on an older server (Dell 600SC, 32 bit 
Slackware, 2GB memory) for several years and, while the application will 
throw exceptions now and then, it never crashed the JVM.  This leads me 
to believe the problem has something to do with the 64 bit JVM but, with 
errors, I can't be certain and don't know what I can do about it except 
go back to 32 bit.


I plan to reinstall Java tonight but, it would seem if the JVM were 
corrupted, it simply would not run.


Any ideas are welcome.


I'm with Andy: the Linux OOM killer would show those symptoms.  With
those settings, you're not leaving a lot of memory for the OS.  How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter


Despite later posts, I'm leaning towards agreeing with the above, based on 
the information provided.


N.B. Maximum heap size does not equal the maximum memory a JVM can/will 
use.


The Perm generation is in addition to the heap so you're effectively 
saying that the memory you want to use is 2400 + 512 (+ other stuff 
falling into the non-heap category).


So you may be using more than 3Gb; jmap -heap  will provide more 
information, you could regularly dump the output to file to see what's 
happening with the JVM.


http://java.sun.com/javase/6/docs/technotes/guides/management/jconsole.html

(Confession: I'm not sure I've got my head round it yet)



An OOM should leave a trace somewhere on your system, it might be a single 
log entry saying that a given process id has been terminated.


Google for specific info for your OS.


p




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Re: JVM goes away

2010-01-11 Thread Pid

On 11/01/2010 23:06, Peter Crowther wrote:

2010/1/11 Carl:

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB memory.  I 
have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance with Java 
VisualVM and have seen nothing strange.  GC seems to be performing well and the 
memory rarely gets anywhere near the max.

The server runs well, idling along at 2-5% load, serving jsp's, etc. at a 
reasonable speed.  Without warning and with no tracks in any log (Tomcat or 
system) or to the console, the JVM will just go away, disappear.  Sometimes, 
the system will run for a week, sometimes for only several hours.  Initially, I 
thought the problem was the turbo or hyperthreading but, no, the problem 
persists.

When the JVM goes away, the memory that it held is still being held (as seen 
from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32 bit 
Slackware, 2GB memory) for several years and, while the application will throw 
exceptions now and then, it never crashed the JVM.  This leads me to believe 
the problem has something to do with the 64 bit JVM but, with errors, I can't 
be certain and don't know what I can do about it except go back to 32 bit.

I plan to reinstall Java tonight but, it would seem if the JVM were corrupted, 
it simply would not run.

Any ideas are welcome.


I'm with Andy: the Linux OOM killer would show those symptoms.  With
those settings, you're not leaving a lot of memory for the OS.  How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter


Despite later posts, I'm leaning towards agreeing with the above, based 
on the information provided.


N.B. Maximum heap size does not equal the maximum memory a JVM can/will use.

The Perm generation is in addition to the heap so you're effectively 
saying that the memory you want to use is 2400 + 512 (+ other stuff 
falling into the non-heap category).


So you may be using more than 3Gb; jmap -heap  will provide more 
information, you could regularly dump the output to file to see what's 
happening with the JVM.


http://java.sun.com/javase/6/docs/technotes/guides/management/jconsole.html

(Confession: I'm not sure I've got my head round it yet)



An OOM should leave a trace somewhere on your system, it might be a 
single log entry saying that a given process id has been terminated.


Google for specific info for your OS.


p




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Re: JVM goes away

2010-01-11 Thread Carl

Konstantin,

Yes, it was started using startup.sh in tomcat/bin and used the same ports 
(8080, 8443, 443) as the tomcat that died.  The fact that the OS did not 
recover the memory implied to me (could be wrong, even very wrong) that the 
JVM just died.  However, as you point out, how did the ports get freed up. 
So, now it looks more like I am somehow killing Tomcat because that is the 
only way those ports could be freed.  Shouldn't I see some tracks in one of 
Tomcat's logs then?


Thanks,

Carl

- Original Message - 
From: "Konstantin Kolinko" 

To: "Tomcat Users List" 
Sent: Monday, January 11, 2010 7:31 PM
Subject: Re: JVM goes away


2010/1/12 Carl :

Peter and Andy,

Thanks for your quick responses.

Memory: Physical - $GB
Used - 2.4GB to 3.0 GB (according to top... have never seen it
above 3GB)
Swap - 19GB, none ever used (or, at least I have never seen
any used.)

The above are all from top.

The 2.4GB is after the JVM just crashed (after running less than an hour
after having run for five days with nary a blip) and I just restarted 
Tomcat

(customers are running right now) so it is a little higher than normal
because it has perhaps .5GB+ unrecovered from the point at which the JVM
crashed.



You started the new Tomcat instance using the same port numbers that
were used by the old one?

If so, the old one has really died, but how come that the memory was not 
freed?




I checked dmsg but saw nothing that looked out of the ordinary.


dmesg they say

In OOM killer scenario it can be sometimes caused by some maintenance
task scheduled with cron. But an OOM killer which does not free memory
would be very much useless.



Best regards,
Konstantin Kolinko

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Re: JVM goes away

2010-01-11 Thread Konstantin Kolinko
2010/1/12 Carl :
> Peter and Andy,
>
> Thanks for your quick responses.
>
> Memory:  Physical - $GB
>               Used - 2.4GB to 3.0 GB (according to top... have never seen it
> above 3GB)
>               Swap - 19GB, none ever used (or, at least I have never seen
> any used.)
>
> The above are all from top.
>
> The 2.4GB is after the JVM just crashed (after running less than an hour
> after having run for five days with nary a blip) and I just restarted Tomcat
> (customers are running right now) so it is a little higher than normal
> because it has perhaps .5GB+ unrecovered from the point at which the JVM
> crashed.
>

You started the new Tomcat instance using the same port numbers that
were used by the old one?

If so, the old one has really died, but how come that the memory was not freed?


> I checked dmsg but saw nothing that looked out of the ordinary.

dmesg they say

In OOM killer scenario it can be sometimes caused by some maintenance
task scheduled with cron. But an OOM killer which does not free memory
would be very much useless.



Best regards,
Konstantin Kolinko

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Re: JVM goes away

2010-01-11 Thread Carl

Andy,

Yes, that is 4GB... just a little stressed.

I did a 'find' for all 'hs_err*.pid' files and turned up nothing, no files 
were found.


I am using catalina.sh to start Tomcat and I had always assumed that the 
java JVM was started in that process somewhere.  I apologize for my 
ignorance here but I don't see any java processes other than Tomcat and 
Visual JVM (using ps -ef.)  I do have a little java listener also running 
that serves some data to client applets.  Neither the little listener nor 
Visual JVM went down when Tomcat stopped.


Tomcat is in /usr/local/tomcat (bin, conf, etc.)  Java is in usr/local/java. 
Is the 'cwd of the java process' the directory where the application 
(Tomcat) is running or the bin directory of java?  (I don't see anything in 
any of those areas that looks odd or informative.)


How can I tell if the JVM is or is not running as a daemon?

TIA,

Carl


- Original Message - 
From: "Andy Wang" 

To: 
Sent: Monday, January 11, 2010 6:42 PM
Subject: Re: JVM goes away



I assume $GB means 4GB :)
With that kind of memory use it doesn't sound entirely like the OOM
killer.  Have you looked around the filesystem for hs_err[pid].pid
files?  This usually is written to the cwd of the java process.  That
might give you ideas if it's a native crash.  If so, it'll have the java
stack, and other native information that might shed some light.

Otherwise, if the Tomcat JVM isn't running as a daemon, is it nohup'ed?

Andy

On 01/11/2010 05:33 PM, Carl wrote:

Peter and Andy,

Thanks for your quick responses.

Memory:  Physical - $GB
   Used - 2.4GB to 3.0 GB (according to top... have never
seen it above 3GB)
   Swap - 19GB, none ever used (or, at least I have never
seen any used.)

The above are all from top.

The 2.4GB is after the JVM just crashed (after running less than an
hour after having run for five days with nary a blip) and I just
restarted Tomcat (customers are running right now) so it is a little
higher than normal because it has perhaps .5GB+ unrecovered from the
point at which the JVM crashed.

I checked dmsg but saw nothing that looked out of the ordinary.

I will cut back on the heap and permgen tonight (gonna be a long one.)

Any ideas are welcome.

Thanks,

Carl


- Original Message - From: "Peter Crowther"

To: "Tomcat Users List" 
Sent: Monday, January 11, 2010 6:06 PM
Subject: Re: JVM goes away


2010/1/11 Carl :

This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB
memory. I have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance with
Java VisualVM and have seen nothing strange. GC seems to be
performing well and the memory rarely gets anywhere near the max.

The server runs well, idling along at 2-5% load, serving jsp's, etc.
at a reasonable speed. Without warning and with no tracks in any log
(Tomcat or system) or to the console, the JVM will just go away,
disappear. Sometimes, the system will run for a week, sometimes for
only several hours. Initially, I thought the problem was the turbo or
hyperthreading but, no, the problem persists.

When the JVM goes away, the memory that it held is still being held
(as seen from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32
bit Slackware, 2GB memory) for several years and, while the
application will throw exceptions now and then, it never crashed the
JVM. This leads me to believe the problem has something to do with
the 64 bit JVM but, with errors, I can't be certain and don't know
what I can do about it except go back to 32 bit.

I plan to reinstall Java tonight but, it would seem if the JVM were
corrupted, it simply would not run.

Any ideas are welcome.


I'm with Andy: the Linux OOM killer would show those symptoms.  With
those settings, you're not leaving a lot of memory for the OS.  How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter

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---

Re: JVM goes away

2010-01-11 Thread Andy Wang
I assume $GB means 4GB :)
With that kind of memory use it doesn't sound entirely like the OOM
killer.  Have you looked around the filesystem for hs_err[pid].pid
files?  This usually is written to the cwd of the java process.  That
might give you ideas if it's a native crash.  If so, it'll have the java
stack, and other native information that might shed some light.

Otherwise, if the Tomcat JVM isn't running as a daemon, is it nohup'ed?

Andy

On 01/11/2010 05:33 PM, Carl wrote:
> Peter and Andy,
>
> Thanks for your quick responses.
>
> Memory:  Physical - $GB
>Used - 2.4GB to 3.0 GB (according to top... have never
> seen it above 3GB)
>Swap - 19GB, none ever used (or, at least I have never
> seen any used.)
>
> The above are all from top.
>
> The 2.4GB is after the JVM just crashed (after running less than an
> hour after having run for five days with nary a blip) and I just
> restarted Tomcat (customers are running right now) so it is a little
> higher than normal because it has perhaps .5GB+ unrecovered from the
> point at which the JVM crashed.
>
> I checked dmsg but saw nothing that looked out of the ordinary.
>
> I will cut back on the heap and permgen tonight (gonna be a long one.)
>
> Any ideas are welcome.
>
> Thanks,
>
> Carl
>
>
> - Original Message ----- From: "Peter Crowther"
> 
> To: "Tomcat Users List" 
> Sent: Monday, January 11, 2010 6:06 PM
> Subject: Re: JVM goes away
>
>
> 2010/1/11 Carl :
>> This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB
>> memory. I have turned off both the turbo mode and hyperthreading.
>>
>> The environment:
>>
>> 64 bit Slackware Linux
>>
>> java version "1.6.0_17"
>> Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
>> Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)
>>
>> Tomcat: apache-tomcat-6.0.20
>>
>> JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"
>>
>> I have watched observed the memory usage and general performance with
>> Java VisualVM and have seen nothing strange. GC seems to be
>> performing well and the memory rarely gets anywhere near the max.
>>
>> The server runs well, idling along at 2-5% load, serving jsp's, etc.
>> at a reasonable speed. Without warning and with no tracks in any log
>> (Tomcat or system) or to the console, the JVM will just go away,
>> disappear. Sometimes, the system will run for a week, sometimes for
>> only several hours. Initially, I thought the problem was the turbo or
>> hyperthreading but, no, the problem persists.
>>
>> When the JVM goes away, the memory that it held is still being held
>> (as seen from top) but it is nowhere near the machine physical memory.
>>
>> The application has been running on an older server (Dell 600SC, 32
>> bit Slackware, 2GB memory) for several years and, while the
>> application will throw exceptions now and then, it never crashed the
>> JVM. This leads me to believe the problem has something to do with
>> the 64 bit JVM but, with errors, I can't be certain and don't know
>> what I can do about it except go back to 32 bit.
>>
>> I plan to reinstall Java tonight but, it would seem if the JVM were
>> corrupted, it simply would not run.
>>
>> Any ideas are welcome.
>
> I'm with Andy: the Linux OOM killer would show those symptoms.  With
> those settings, you're not leaving a lot of memory for the OS.  How
> much swap do you have, and does the same thing happen if you reduce
> the Java heap and permgen space?
>
> - Peter
>
> -
> To unsubscribe, e-mail: users-unsubscr...@tomcat.apache.org
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>
>
>
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Re: JVM goes away

2010-01-11 Thread Carl

Peter and Andy,

Thanks for your quick responses.

Memory:  Physical - $GB
   Used - 2.4GB to 3.0 GB (according to top... have never seen 
it above 3GB)
   Swap - 19GB, none ever used (or, at least I have never seen 
any used.)


The above are all from top.

The 2.4GB is after the JVM just crashed (after running less than an hour 
after having run for five days with nary a blip) and I just restarted Tomcat 
(customers are running right now) so it is a little higher than normal 
because it has perhaps .5GB+ unrecovered from the point at which the JVM 
crashed.


I checked dmsg but saw nothing that looked out of the ordinary.

I will cut back on the heap and permgen tonight (gonna be a long one.)

Any ideas are welcome.

Thanks,

Carl


- Original Message - 
From: "Peter Crowther" 

To: "Tomcat Users List" 
Sent: Monday, January 11, 2010 6:06 PM
Subject: Re: JVM goes away


2010/1/11 Carl :
This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB 
memory. I have turned off both the turbo mode and hyperthreading.


The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance with Java 
VisualVM and have seen nothing strange. GC seems to be performing well and 
the memory rarely gets anywhere near the max.


The server runs well, idling along at 2-5% load, serving jsp's, etc. at a 
reasonable speed. Without warning and with no tracks in any log (Tomcat or 
system) or to the console, the JVM will just go away, disappear. 
Sometimes, the system will run for a week, sometimes for only several 
hours. Initially, I thought the problem was the turbo or hyperthreading 
but, no, the problem persists.


When the JVM goes away, the memory that it held is still being held (as 
seen from top) but it is nowhere near the machine physical memory.


The application has been running on an older server (Dell 600SC, 32 bit 
Slackware, 2GB memory) for several years and, while the application will 
throw exceptions now and then, it never crashed the JVM. This leads me to 
believe the problem has something to do with the 64 bit JVM but, with 
errors, I can't be certain and don't know what I can do about it except go 
back to 32 bit.


I plan to reinstall Java tonight but, it would seem if the JVM were 
corrupted, it simply would not run.


Any ideas are welcome.


I'm with Andy: the Linux OOM killer would show those symptoms.  With
those settings, you're not leaving a lot of memory for the OS.  How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter

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Re: JVM goes away

2010-01-11 Thread Peter Crowther
2010/1/11 Carl :
> This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB memory.  
> I have turned off both the turbo mode and hyperthreading.
>
> The environment:
>
> 64 bit Slackware Linux
>
> java version "1.6.0_17"
> Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
> Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)
>
> Tomcat: apache-tomcat-6.0.20
>
> JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"
>
> I have watched observed the memory usage and general performance with Java 
> VisualVM and have seen nothing strange.  GC seems to be performing well and 
> the memory rarely gets anywhere near the max.
>
> The server runs well, idling along at 2-5% load, serving jsp's, etc. at a 
> reasonable speed.  Without warning and with no tracks in any log (Tomcat or 
> system) or to the console, the JVM will just go away, disappear.  Sometimes, 
> the system will run for a week, sometimes for only several hours.  Initially, 
> I thought the problem was the turbo or hyperthreading but, no, the problem 
> persists.
>
> When the JVM goes away, the memory that it held is still being held (as seen 
> from top) but it is nowhere near the machine physical memory.
>
> The application has been running on an older server (Dell 600SC, 32 bit 
> Slackware, 2GB memory) for several years and, while the application will 
> throw exceptions now and then, it never crashed the JVM.  This leads me to 
> believe the problem has something to do with the 64 bit JVM but, with errors, 
> I can't be certain and don't know what I can do about it except go back to 32 
> bit.
>
> I plan to reinstall Java tonight but, it would seem if the JVM were 
> corrupted, it simply would not run.
>
> Any ideas are welcome.

I'm with Andy: the Linux OOM killer would show those symptoms.  With
those settings, you're not leaving a lot of memory for the OS.  How
much swap do you have, and does the same thing happen if you reduce
the Java heap and permgen space?

- Peter

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Re: JVM goes away

2010-01-11 Thread Andy Wang
dmesg
check if the linux out of memory kill struck you :)

Andy

On 01/11/2010 04:37 PM, Carl wrote:
> This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB memory.  
> I have turned off both the turbo mode and hyperthreading.
>
> The environment:
>
> 64 bit Slackware Linux
>
> java version "1.6.0_17"
> Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
> Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)
>
> Tomcat: apache-tomcat-6.0.20
>
> JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"
>
> I have watched observed the memory usage and general performance with Java 
> VisualVM and have seen nothing strange.  GC seems to be performing well and 
> the memory rarely gets anywhere near the max.
>
> The server runs well, idling along at 2-5% load, serving jsp's, etc. at a 
> reasonable speed.  Without warning and with no tracks in any log (Tomcat or 
> system) or to the console, the JVM will just go away, disappear.  Sometimes, 
> the system will run for a week, sometimes for only several hours.  Initially, 
> I thought the problem was the turbo or hyperthreading but, no, the problem 
> persists.
>
> When the JVM goes away, the memory that it held is still being held (as seen 
> from top) but it is nowhere near the machine physical memory.
>
> The application has been running on an older server (Dell 600SC, 32 bit 
> Slackware, 2GB memory) for several years and, while the application will 
> throw exceptions now and then, it never crashed the JVM.  This leads me to 
> believe the problem has something to do with the 64 bit JVM but, with errors, 
> I can't be certain and don't know what I can do about it except go back to 32 
> bit.
>
> I plan to reinstall Java tonight but, it would seem if the JVM were 
> corrupted, it simply would not run.
>
> Any ideas are welcome.
>
> TIA,
>
> Carl
>
>
>   


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JVM goes away

2010-01-11 Thread Carl
This is a new server, a Dell T110 with a Xeon 3440 processor and 4GB memory.  I 
have turned off both the turbo mode and hyperthreading.

The environment:

64 bit Slackware Linux

java version "1.6.0_17"
Java(TM) SE Runtime Environment (build 1.6.0_17-b04)
Java HotSpot(TM) 64-Bit Server VM (build 14.3-b01, mixed mode)

Tomcat: apache-tomcat-6.0.20

JAVA_OPTS="-Xms2400m -Xmx2400m -XX:PermSize=512m -XX:MaxPermSize=512m"

I have watched observed the memory usage and general performance with Java 
VisualVM and have seen nothing strange.  GC seems to be performing well and the 
memory rarely gets anywhere near the max.

The server runs well, idling along at 2-5% load, serving jsp's, etc. at a 
reasonable speed.  Without warning and with no tracks in any log (Tomcat or 
system) or to the console, the JVM will just go away, disappear.  Sometimes, 
the system will run for a week, sometimes for only several hours.  Initially, I 
thought the problem was the turbo or hyperthreading but, no, the problem 
persists.

When the JVM goes away, the memory that it held is still being held (as seen 
from top) but it is nowhere near the machine physical memory.

The application has been running on an older server (Dell 600SC, 32 bit 
Slackware, 2GB memory) for several years and, while the application will throw 
exceptions now and then, it never crashed the JVM.  This leads me to believe 
the problem has something to do with the 64 bit JVM but, with errors, I can't 
be certain and don't know what I can do about it except go back to 32 bit.

I plan to reinstall Java tonight but, it would seem if the JVM were corrupted, 
it simply would not run.

Any ideas are welcome.

TIA,

Carl