Life would be easier for many people if the software developers would
contribute to the CCP4 wiki, and make/keep it a central place for such
information.
@Frank In this case,
https://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php?title=Coot#Installing_Coot_on_Windows
was even uptodate.
.
Best,
Kay
P.S. third attempt to post this; first attempt was on Tue, 10 Jan 2023
10:12 CET. Jiscmail does no longer seem to accept the browser-based
replies on https://www.jiscmail.ac.uk/cgi-bin/webadmin?A0=COOT .
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email
a) to use a newer computer
b) potentially: to use the CCP4 distribution for old AMD CPUs
c) the person who produces the binary should use more conservative compiler
options
HTH,
Kay
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email: kay.diederi...@uni-konstanz.de
regret that I didn't use a Virtualbox with Ubuntu...
>
>Good Luck with the course!
>Jan
>
>Am 29.01.2021 um 19:01 schrieb Kay Diederichs:
>> Dear all,
>>
>> today I finally tried WSL2 on Windows10, with the intent of being able to
>> use CCP4 incl
Dear all,
today I finally tried WSL2 on Windows10, with the intent of being able to use
CCP4 including coot, and XDS / XDSGUI e.g. in workshops when many students have
Windows machines.
I was successful when using Xming (but not VcXsrv) as X-server. My writeup is
at
Hi Darin
the coot script runs the coot-bin binary. Try
coot --check-libs
and check the output. All libraries listed as "not found" will result in the
"error while loading shared libraries: XXX.so.Y: cannot open shared object
file: No such file or directory" type of problem. This works similarly
Hi Darin,
The line
>guile: error while loading shared libraries: libguile.so.17: cannot open
>shared object file: No such file or directory
tells you what the (first) problem is: libguile is not installed. (I write
"first" because I'd expect other libraries to be missing as well - try
ldd
We also see the ssh problem (but I didn't investigate thoroughly).
We then use x2goclient; this runs an X server on the remote machine and
connects a desktop session to it. That desktop runs coot (and anything else)
nicely. Easy to set up, and for some purposes better than NoMachine.
HTH,
Kay
I think coot on RHEL6 was running well with HD 3000 (not 4000 !)
graphics - a Toshiba Portege 13 notebook - will check/report next week.
Kay
Am 20.09.14 um 01:00 schrieb COOT automatic digest system:
Is this really the same problem (only slow with labels on)? Kay once
reported that RHEL and
Hi Ethan and Dale,
I assume that you were talking about HD 5000 performance on Linux?
I confirm, for 64bit Ubuntu 12.04LTS and kernel 3.5.0, that the problem with
the labels exists in coot on a HD 4000 machine. Apart from that quirk, the
graphics are fast (and HD5000 would be even faster).
could find out with perf where coot is spinning ...
best,
Kay
Best regards,
Folmer
2014-03-28 8:25 GMT+01:00 Kay Diederichs kay.diederi...@uni-konstanz.de
mailto:kay.diederi...@uni-konstanz.de:
Hi Ethan and Dale,
I assume that you were talking about HD 5000 performance on Linux
Dear Bernhard,
so I'm a bit late with this, since your problem is solved already.
Nevertheless I documented at
http://strucbio.biologie.uni-konstanz.de/ccp4wiki/index.php/Coot#Example:_installing_a_64bit_nightly_CentOS5_binary_build_on_64bit_SL6.1
the installation of the CentOS5 binary build
-gtk2.tar.gz
S: definition of insanity: doing the same thing over and over and expecting
a different outcome.
-Original Message-
From: Mailing list for users of COOT Crystallographic Software
[mailto:COOT@JISCMAIL.AC.UK] On Behalf Of Kay Diederichs
Sent: Thursday, February 09, 2012 11:39
Bernhard,
the CentOS5 binaries used to work well on RHEL6 /CentOS6/ SL6 ; there was a
glitch a few weeks ago which was fixed after I reported it (
https://www.jiscmail.ac.uk/cgi-bin/webadmin?A2=coot;31d9d7f5.1201 ). I install
the latest nightly build every couple of months / weeks, and this
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email: kay.diederi...@uni-konstanz.deTel +49 7531 88 4049 Fax 3183
Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz
This e-mail is digitally signed. If your e-mail client does not have the
necessary
, it requires packages that
CentOS6 has replaced...
At least that is what it looks like to me...
Cheers,
we use coot-Linux-x86_64-centos-5-gtk2-python on CentOS 6 64bit. Works
like a charm.
HTH,
Kay
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email: kay.diederi...@uni
Am 20:59, schrieb Yong Wang:
Hi,
We are having a problem with the coot window in our Linux machines after a
patch. The error message reads like
(coot-real:8985): GtkGLExt-WARNING **: cannot create GdkGLContext
(coot-real:8985): GdkGLExt-CRITICAL **:
Am 11.04.2011 16:26, schrieb Leonid Flaks:
On 04/07/2011 09:07 AM, Kay Diederichs wrote:
On 04/07/2011 02:32 PM, Leonid Flaks wrote:
On 04/07/2011 02:23 AM, Kay Diederichs wrote:
Am 20:59, schrieb Leon Flaks:
I am running coot on 64-bit Fedora 14 installed from binaries
compiled for centos 5
Am 11.04.2011 21:09, schrieb Ben Eisenbraun:
On Mon, Apr 11, 2011 at 08:46:36PM +0200, Kay Diederichs wrote:
110 lines elided
I'm a big fan of KISS - my translation would be keep it simple and
standard. The KISS principle states that simplicity should be a key
goal in design
Hi Alejandro,
on our single 32bit CentOS-5 system (the other machines are all 64bit
nowadays) we quite recently installed the latest binary for CentOS-4.
This seems to work well.
HTH,
Kay
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email: kay.diederi...@uni
Hi,
We have the following system and have found that Coot (0.5.2 and 0.6) runs
very slowly:
-Dual Xeons @ 3 GHz
-4 GB RAM
-nVidia 256 MB Quadro FX 3450/4000 SDI
- 250 GB hard drive space
-Red Hat Enterprise Linux WS release 4 (Nahant Update 7)
Rotating a 500 amino acid model is fine but
show a signal?
wondering,
Kay
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email: kay.diederi...@uni-konstanz.deTel +49 7531 88 4049 Fax 3183
Fachbereich Biologie, Universität Konstanz, Box M647, D-78457 Konstanz
This e-mail is digitally signed. If your e-mail
?
BTW if the York server is out of business: I mirror all new files
appearing on the York server, at
ftp://turn5.biologie.uni-konstanz.de/coot/software/
(so that site has a binaries/nightlies/pre-release subdirectory as well)
HTH,
Kay
--
Kay Diederichshttp://strucbio.biologie.uni
, so to say) and the
contents of the window beneath it is visible (see attached screenshot).
I had the same problem with previous coot versions. Anything I can do
about that?
thanks,
Kay
--
Kay Diederichshttp://strucbio.biologie.uni-konstanz.de
email: kay.diederi...@uni
Victor Alves schrieb:
Hello
Since Ubuntu 9.04 now comes with Python 2.6, is there among the various Coot
versions available in Nightly builds, one that comes with GTK2 but not with
Python?
I hope this is not a very dumb question, but in my ignorance I have these
all kind of mixed up, namely
, and would enable you to use different CCP4 versions in
parallel, and so on - you get the idea.
HTH,
Kay
Kay Diederichs schrieb:
Victor Alves schrieb:
Hello
Since Ubuntu 9.04 now comes with Python 2.6, is there among the
various Coot
versions available in Nightly builds, one that comes with GTK2
format
convention - no idea why).
running through pdbset fixes this easily.
best,
Kay
--
Kay Diederichs http://strucbio.biologie.uni-konstanz.de
email: [EMAIL PROTECTED] Tel +49 7531 88 4049 Fax 3183
Fachbereich Biologie, Universitaet Konstanz, Box M647, D-78457 Konstanz
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