Re: [OMPI devel] mpirun alternative

2021-03-09 Thread Gabriel Tanase via devel
;tcp://10.0.16.120:44789" -mca plm "rsh" --tree-spawn -mca routed "radix" -mca orte_parent_uri "2752512000.0;tcp://10.0.16.120:44789" -mca rmaps_base_mapping_policy "node" -mca pmix "^s1,s2,cray,isolated" Now I am thinking that probably I don;t

[OMPI devel] mpirun alternative

2021-03-05 Thread Gabriel Tanase via devel
192.168.0.180:52093 export PMIX_SERVER_URI2=mpirun-38f9d3525c2c-53291@0.0;tcp4:// 192.168.0.180:52093 export _=/usr/bin/env ./exe Thx for your help, --Gabriel

Re: [OMPI devel] configure problem on master

2021-02-09 Thread Gabriel, Edgar via devel
Sounds like I need to resync the PMIx lustre configury with the OMPI one - I'll do that. On Feb 4, 2021, at 11:56 AM, Gabriel, Edgar via devel mailto:devel@lists.open-mpi.org>> wrote: I have a weird problem running configure on master on our cluster. Basically, configure fails whe

Re: [OMPI devel] configure problem on master

2021-02-08 Thread Gabriel, Edgar via devel
defined reference to symbol 'sem_open@@GLIBC_2.2.5' //usr/lib64/libpthread.so.0: error adding symbols: DSO missing from command line collect2: error: ld returned 1 exit status The test passes on v4.1.x because the '-pthread' flag is passed Cheers, Gilles On Sat, Feb 6, 2021

Re: [OMPI devel] configure problem on master

2021-02-05 Thread Gabriel, Edgar via devel
The library that contains sem_init and sem_open, the two functions that we check for in the configure script From: Jeff Squyres (jsquyres) Sent: Friday, February 5, 2021 7:31 PM To: Open MPI Developers List Cc: Gabriel, Edgar Subject: Re: [OMPI devel] configure problem on master Which

Re: [OMPI devel] configure problem on master

2021-02-05 Thread Gabriel, Edgar via devel
and is not anymore? Thanks Edgar From: devel On Behalf Of Gabriel, Edgar via devel Sent: Thursday, February 4, 2021 2:15 PM To: Open MPI Developers Cc: Gabriel, Edgar Subject: Re: [OMPI devel] configure problem on master excellent, thanks! I have meanwhile a more detailed suspicion: -- looking f

Re: [OMPI devel] configure problem on master

2021-02-04 Thread Gabriel, Edgar via devel
] configure problem on master Sounds like I need to resync the PMIx lustre configury with the OMPI one - I'll do that. On Feb 4, 2021, at 11:56 AM, Gabriel, Edgar via devel mailto:devel@lists.open-mpi.org>> wrote: I have a weird problem running configure on master on our cluster

[OMPI devel] configure problem on master

2021-02-04 Thread Gabriel, Edgar via devel
I have a weird problem running configure on master on our cluster. Basically, configure fails when I request lustre support, but not from ompio but openpmix. What makes our cluster setup maybe a bit special is that the lustre libraries are not installed in the standard path, but in /opt, and thu

Re: [OMPI devel] Apparent bug in MPI_File_seek() using MPI_SEEK_END

2020-12-03 Thread Gabriel, Edgar via devel
yes please, file a bug report and I will check it out in the next few days. Thanks! Edgar From: devel On Behalf Of Dave Taflin via devel Sent: Thursday, December 3, 2020 1:05 PM To: devel@lists.open-mpi.org Cc: Dave Taflin Subject: [OMPI devel] Apparent bug in MPI_File_seek() using MPI_SEEK_END

Re: [OMPI devel] Announcing Open MPI v4.0.0rc1

2018-09-19 Thread Gabriel, Edgar
I performed some tests on our Omnipath cluster, and I have a mixed bag of results with 4.0.0rc1 1. Good news, the problems with the psm2 mtl that I reported in June/July seem to be fixed. I still get however a warning every time I run a job with 4.0.0, e.g. compute-1-1.local.4351PSM2

[OMPI devel] Open MPI with psm2 on master

2018-06-17 Thread Gabriel, Edgar
) --snip- Looks like a version mismatch that maybe the configure script should catch. Anyway, just wanted to bring this up as a datapoint. Thanks Edgar -- Edgar Gabriel Associate Professor Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 228Houston, TX-77204

Re: [OMPI devel] Shared object dependencies

2018-06-12 Thread Gabriel, Edgar
Well, I am still confused. What is different on nixOS vs. other linux distros that makes this error appear, and is it relevant enough for the backport or should we just go forward for 4.0? Is it again a RTLD_GLOBAL issue as it was back 2014? And last but not least, I raised on the github discuss

Re: [OMPI devel] Shared object dependencies

2018-06-12 Thread Gabriel, Edgar
> (among other abstraction violations) > > > > What about following up in github ? > > > > Cheers, > > > > Gilles > > > > On Tuesday, June 12, 2018, Gabriel, Edgar > wrote: > > So , I am still surprised to see this error message: if you look at lets

Re: [OMPI devel] Shared object dependencies

2018-06-12 Thread Gabriel, Edgar
So , I am still surprised to see this error message: if you look at lets say just one error message (and all others are the same): > > [orc-login2:107400] mca_base_component_repository_open: unable to open > > mca_fcoll_individual: .../lib/openmpi/mca_fcoll_individual.so: > > undefined symbol: mc

Re: [OMPI devel] Shared object dependencies

2018-06-08 Thread Gabriel, Edgar
I wanted to add one item before I forget (although I agree with what Jeff said): The error messages shown reminds me of the problem that we had with ompio in 1.8/1.10 series when the RTLD_GLOBAL option was not correctly set. However, that was fixed in the 2.0 series and going forward, so if th

Re: [OMPI devel] subcommunicator OpenMPI issues on K

2017-11-07 Thread Edgar Gabriel
My guess would be that both aspects (sorting + CID allocation) could be a problem. There was a loong time back an effort to convert the sequence of allgather + qsort into a distributed sort (based on a paper by Moody et. al. where he demonstrated the benefits of this approach).  We didn't get

Re: [OMPI devel] #warning "Including liblustreapi.h is deprecated. Include lustreapi.h directly."

2016-12-15 Thread Edgar Gabriel
I'll put it on my to do list to write the configure logic for that, shouldn't be too difficult. Thanks for the report.Edgar___ devel mailing list devel@lists.open-mpi.org https://rfd.newmexicoconsortium.org/mailman/listinfo/devel

Re: [OMPI devel] 2.0.0rc4 Crash in MPI_File_write_all_end

2016-07-12 Thread Edgar Gabriel
On 08/07/16 03:14 PM, Edgar Gabriel wrote: I think I found the problem, I filed a pr towards master, and if that passes I will file a pr for the 2.x branch. Thanks! Edgar On 7/8/2016 1:14 PM, Eric Chamberland wrote: On 08/07/16 01:44 PM, Edgar Gabriel wrote: ok, but just to be able to

Re: [OMPI devel] 2.0.0rc4 Crash in MPI_File_write_all_end

2016-07-08 Thread Edgar Gabriel
I think I found the problem, I filed a pr towards master, and if that passes I will file a pr for the 2.x branch. Thanks! Edgar On 7/8/2016 1:14 PM, Eric Chamberland wrote: On 08/07/16 01:44 PM, Edgar Gabriel wrote: ok, but just to be able to construct a test case, basically what you are

Re: [OMPI devel] 2.0.0rc4 Crash in MPI_File_write_all_end

2016-07-08 Thread Edgar Gabriel
2 PM, Edgar Gabriel wrote: The default MPI I/O library has changed in the 2.x release to OMPIO for ok, I am now doing I/O on my own hard drive... but I can test over NFS easily. For Lustre, I will have to produce a reduced example out of our test suite... most file systems. I can look into that pro

Re: [OMPI devel] 2.0.0rc4 Crash in MPI_File_write_all_end

2016-07-08 Thread Edgar Gabriel
list de...@open-mpi.org Subscription: https://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: http://www.open-mpi.org/community/lists/devel/2016/07/19169.php -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of C

Re: [OMPI devel] parameters for OMPIO

2016-05-11 Thread Edgar Gabriel
grep ompio Am I doing something wrong, or are these options not supported in these versions? kindest regards Mike -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman

Re: [OMPI devel] OMPIO vs ROMIO

2016-05-10 Thread Edgar Gabriel
in the 1.7, 1.8 and 1.10 series ROMIO remains the default. In the upcomgin 2.x series, OMPIO will be the default, except for Lustre file systems, where we will stick with ROMIO as the primary resource. Regarding performance comparison, we ran numerous tests late last year and early this year.

Re: [OMPI devel] [2.0.0rc2] NetBSD build failure (ompio)

2016-05-03 Thread Edgar Gabriel
^ *** Error code 1 Stop. -- Paul H. Hargrove phhargr...@lbl.gov <mailto:phhargr...@lbl.gov> Computer Languages & Systems Software (CLaSS) Group Computer Science Department Tel: +1-510-495-2352 Lawrence Berkeley National Laboratory Fax: +1-510-486-6900 -- Ed

Re: [OMPI devel] UH jenkins node seems out for the holidays

2015-12-31 Thread Edgar Gabriel
the scheduled work on the power infrastructure is finished, the UH jenkins node is available again. Happy new year to everybody Edgar On 12/30/2015 4:29 PM, Edgar Gabriel wrote: I apologize, I completely forgot that t this node is affected. There is work on the electrical infrastructure of

Re: [OMPI devel] UH jenkins node seems out for the holidays

2015-12-30 Thread Edgar Gabriel
I apologize, I completely forgot that t this node is affected. There is work on the electrical infrastructure of the building that hosts the main router to the cs machines. The machines themselves are still up and running, but cannot be reached. It should be finished tomorrow. I'll keep you posted.

Re: [OMPI devel] interfaces gone?

2015-11-12 Thread Edgar Gabriel
argh. Forget about it. Sorry for the noise. linked to the wrong version :-( Edgar On 11/12/2015 11:13 AM, Edgar Gabriel wrote: I have an interesting observation on master, for whatever reason the new non-blocking collective I/O interfaces don't seem to be generated anymore correctly.

[OMPI devel] interfaces gone?

2015-11-12 Thread Edgar Gabriel
I have an interesting observation on master, for whatever reason the new non-blocking collective I/O interfaces don't seem to be generated anymore correctly. Does anybody have an idea what could cause that? /home/gabriel/ompi-tests/mpi2basic_tests/file/read_all.c:416: undefined referen

Re: [OMPI devel] Master won't build

2015-11-08 Thread gabriel
e_open.c:39: warning: function declaration isn't a prototype > > fs_lustre_file_open.c: In function 'alloc_lum': > > fs_lustre_file_open.c:44: error: invalid application of 'sizeof' to > incomplete type 'struct lov_user_md_v3' > > fs_lustre_file_open.c:40: warning: un

Re: [OMPI devel] inter vs. intra communicator problem on master

2015-09-16 Thread Edgar Gabriel
On Wed, Sep 16, 2015 at 08:49:59AM -0500, Edgar Gabriel wrote: something is borked right now on master in the management of inter vs. intra communicators. It looks like intra communicators are wrongly selecting the inter coll module thinking that it is an inter communicator, and we have hangs

[OMPI devel] inter vs. intra communicator problem on master

2015-09-16 Thread Edgar Gabriel
something is borked right now on master in the management of inter vs. intra communicators. It looks like intra communicators are wrongly selecting the inter coll module thinking that it is an inter communicator, and we have hangs because of that. I attach a small replicator, where a bcast of a

Re: [OMPI devel] Pruning from the 2.x branch

2015-06-27 Thread Edgar Gabriel
better to remove it from 2.0.0 and bring it back in a later release. -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, TX-77204, USA Tel: +1

Re: [OMPI devel] Branch for v2.0.0

2015-06-08 Thread Edgar Gabriel
then -- assuming all goes well -- actually branch next Tuesday (16 June 2015) after the weekly webex. -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Roo

Re: [OMPI devel] change in io_ompio.c

2015-05-27 Thread Edgar Gabriel
). i also moved (up) some malloc in order to group them and simplify the handling of error cases. per your comment, one move was incorrect indeed :-( Cheers, Gilles On 5/28/2015 12:14 PM, Edgar Gabriel wrote: ok, I see you moved the malloc up, the malloc was originally just for the receiving side

Re: [OMPI devel] change in io_ompio.c

2015-05-27 Thread Edgar Gabriel
looking at the old code, I understand what you tried to fix, I'll commit a proper version in a couple of min. Thanks Edgar On 5/28/2015 8:44 AM, Edgar Gabriel wrote: ok, I see you moved the malloc up, the malloc was originally just for the receiving side of the communication, you moved

Re: [OMPI devel] change in io_ompio.c

2015-05-27 Thread Edgar Gabriel
ok, I see you moved the malloc up, the malloc was originally just for the receiving side of the communication, you moved it up to cover both. That is however unfortunately not correct. I will fix it in a couple of mins. Thanks Edgar On 5/28/2015 8:25 AM, Edgar Gabriel wrote: Gilles, I saw

[OMPI devel] change in io_ompio.c

2015-05-27 Thread Edgar Gabriel
needs to go. --- Thanks Edgar -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, TX-77204, USA Tel: +1 (713) 743-3857 Fax: +1

Re: [OMPI devel] Open MPI collectives algorithm selection

2015-05-20 Thread Edgar Gabriel
t in the config file). any thoughts ? Cheers, Gilles ___ devel mailing list de...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: http://www.open-mpi.org/community/lists/devel/2015/05/17425.php -- Edgar

Re: [OMPI devel] 1.8.5 release

2015-05-06 Thread Edgar Gabriel
ok, thanks! I will look into it. Edgar On 5/5/2015 8:23 PM, Orion Poplawski wrote: On 05/05/2015 01:12 PM, Edgar Gabriel wrote: Orion, could you provide a couple of more details? I might not be able to fix the problem for ompio in the 1.8 series, but I would definitely like make sure that it

Re: [OMPI devel] 1.8.5 release

2015-05-05 Thread Edgar Gabriel
Orion, could you provide a couple of more details? I might not be able to fix the problem for ompio in the 1.8 series, but I would definitely like make sure that it is not an issue in the master/1.9 series. I compiled netcdf-4.3.3.1 and netcdf-fortran--4.4.2, using hdf-1.8.9, parallel-tests

Re: [OMPI devel] mpi_test_suite question

2015-03-06 Thread Edgar Gabriel
ng list de...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: http://www.open-mpi.org/community/lists/devel/2015/03/17116.php -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Comput

[OMPI devel] openib receive queue settings

2014-12-26 Thread Edgar Gabriel
-param.conf file, e.g. ---snip--- cat ~/.openmpi/mca-params.conf ... btl_openib_receive_queues = S,12288,128,64,32:S,65536,128,64,32 ... --snip--- I receive the following error message: gabriel@crill:~> mpirun --npernode 1 -np 2 ./

Re: [OMPI devel] problem running jobs on ompi-master

2014-12-26 Thread Edgar Gabriel
, First, make sure your master includes https://github.com/open-mpi/ompi/commit/05af80b3025dbb95bdd4280087450791291d7219 If this is not enough, try with --mca coll ^ml Hope this helps Gilles. Edgar Gabriel さんのメール: I have some problems running jobs with ompi-master on one of our clusters (after

[OMPI devel] problem running jobs on ompi-master

2014-12-26 Thread Edgar Gabriel
, and just for the sake of simplicity I attach the output for tcp (there is another openib parameter issue that still linguers, but I will report that later). Here is the output that I receive if setting btl_base_verbose ---snip-- gabriel@crill:~> salloc -N 2 -n 4

Re: [OMPI devel] Trunk warnings

2014-12-12 Thread Edgar Gabriel
___ devel mailing list de...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: http://www.open-mpi.org/community/lists/devel/2014/12/16554.php ___ devel mailing list de...@open-mpi.org Sub

Re: [OMPI devel] RTLD_GLOBAL question

2014-12-02 Thread Edgar Gabriel
is set on the 1.8 series (1.8 series checkout was from Nov. 20, so if something changed in between the result might be different). On 12/2/2014 9:27 AM, Artem Polyakov wrote: 2014-12-02 20:59 GMT+06:00 Edgar Gabriel mailto:gabr...@cs.uh.edu>>: didn't want to interfere with

Re: [OMPI devel] RTLD_GLOBAL question

2014-12-02 Thread Edgar Gabriel
I checked with the debugger, that it did skip the entire section On 12/2/2014 9:04 AM, Jeff Squyres (jsquyres) wrote: Oy -- I thought we fixed that. :-( Are you saying that configure output says that ltdladvise is not found? On Dec 2, 2014, at 9:59 AM, Edgar Gabriel wrote: didn't wa

Re: [OMPI devel] RTLD_GLOBAL question

2014-12-02 Thread Edgar Gabriel
http://www.open-mpi.org/community/lists/devel/2014/12/16397.php -- С Уважением, Поляков Артем Юрьевич Best regards, Artem Y. Polyakov _______ devel mailing list de...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post

Re: [OMPI devel] question to OMPI_DECLSPEC

2014-11-26 Thread Edgar Gabriel
4 11:43 AM, Ralph Castain wrote: >> >>> On Nov 25, 2014, at 9:36 AM, Edgar Gabriel mailto:gabr...@cs.uh.edu>> wrote: >>> >>> On 11/25/2014 11:31 AM, Ralph Castain wrote: >>>> >>>>> On Nov 25, 2014, at 8:24 AM, Edgar

Re: [OMPI devel] question to OMPI_DECLSPEC

2014-11-26 Thread Edgar Gabriel
function pointers will be NULL for ROMIO. Just want to make sure this is ok with everybody. Thanks Edgar On 11/25/2014 11:43 AM, Ralph Castain wrote: On Nov 25, 2014, at 9:36 AM, Edgar Gabriel wrote: On 11/25/2014 11:31 AM, Ralph Castain wrote: On Nov 25, 2014, at 8:24 AM, Edgar

Re: [OMPI devel] question to OMPI_DECLSPEC

2014-11-25 Thread Edgar Gabriel
On 11/25/2014 11:31 AM, Ralph Castain wrote: On Nov 25, 2014, at 8:24 AM, Edgar Gabriel mailto:gabr...@cs.uh.edu>> wrote: On 11/25/2014 10:18 AM, Ralph Castain wrote: Hmmm…no, nothing has changed with regard to declspec that I know about. I’ll ask the obvious things to check: * doe

Re: [OMPI devel] question to OMPI_DECLSPEC

2014-11-25 Thread Edgar Gabriel
I am not aware that it is illegal to call a function of a component from another component. Thanks Edgar On Nov 25, 2014, at 8:07 AM, Edgar Gabriel wrote: Has something changed recently on the trunk/master regarding OMPI_DECLSPEC? The reason I ask is because we get now errors about

[OMPI devel] question to OMPI_DECLSPEC

2014-11-25 Thread Edgar Gabriel
Has something changed recently on the trunk/master regarding OMPI_DECLSPEC? The reason I ask is because we get now errors about unresolved symbols, e.g. symbol lookup error: /home/gabriel/OpenMPI/lib64/openmpi/mca_fcoll_dynamic.so: undefined symbol: ompi_io_ompio_decode_datatype and that

Re: [OMPI devel] Open MPI Developers F2F Q1 2015 (poll closes on Friday, 7th of November)

2014-11-05 Thread Edgar Gabriel
___ devel mailing list de...@open-mpi.org <mailto:de...@open-mpi.org> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: http://www.open-mpi.org/community/lists/devel/2014/11/16216.php

Re: [OMPI devel] Deprecated call in sharedfp framework

2014-10-24 Thread Edgar Gabriel
^ This is with gcc (MacPorts gcc49 4.9.1_0) 4.9.1 Ralph ___ devel mailing list de...@open-mpi.org Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: http://www.open-mpi.org/community/lists/devel/2014/10/16088.php -- Edgar Gabri

Re: [OMPI devel] Need to know your Github ID

2014-09-10 Thread Edgar Gabriel
samuel shiqing swise tkordenbrock vasily vvenkates vvenkatesan yaeld yosefe -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, T

Re: [OMPI devel] segfault in openib component on trunk

2014-08-28 Thread Edgar Gabriel
? Thanks Edgar On 08/28/2014 04:19 PM, Edgar Gabriel wrote: we are having recently problems running trunk with openib component enabled on one of our clusters. The problem occurs right in the initialization part, here is the stack right before the segfault: ---snip--- (gdb) where #0

[OMPI devel] segfault in openib component on trunk

2014-08-28 Thread Edgar Gabriel
we are having recently problems running trunk with openib component enabled on one of our clusters. The problem occurs right in the initialization part, here is the stack right before the segfault: ---snip--- (gdb) where #0 mca_btl_openib_tune_endpoint (openib_btl=0x762a40, endpoint=0x7d9660)

Re: [OMPI devel] Agenda for next week

2014-06-19 Thread Edgar Gabriel
sorry, let me be more precise for Wednesday, I have time before 12pm on Wednesday. Thanks Edgar On 6/19/2014 2:52 PM, Edgar Gabriel wrote: > the best time for me would be either Wednesday morning (basically any > time), or Thursday morning before 11am central. > > Thanks > Edg

Re: [OMPI devel] Agenda for next week

2014-06-19 Thread Edgar Gabriel
it to ensure it >>> gets covered? >>> >>> >>> On Jun 19, 2014, at 10:36 AM, Edgar Gabriel wrote: >>> >>>> If possible, I would like to attend remotely the discussion about OMPIO >>>> as well. >>>> >>>>

Re: [OMPI devel] Agenda for next week

2014-06-19 Thread Edgar Gabriel
gt; > Are there any other topics that people wanted to remote in to? Fair warning: > remote attendance is "ok" via webex, but it's no substitute for being there. > -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Depa

Re: [OMPI devel] RFC: add STCI component to OMPI/RTE framework

2014-05-29 Thread Edgar Gabriel
lto:de...@open-mpi.org> > >> Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel > >> Link to this post: > http://www.open-mpi.org/community/lists/devel/2014/05/14904.php > >> > > ___

Re: [OMPI devel] RFC: add STCI component to OMPI/RTE framework

2014-05-27 Thread Edgar Gabriel
alph Castain <mailto:r...@open-mpi.org>> wrote: > >> >> On May 27, 2014, at 12:50 PM, Edgar Gabriel > <mailto:gabr...@cs.uh.edu>> wrote: >> >>> >>> >>> On 5/27/2014 2:46 PM, Ralph Castain wrote: >>>> >>>>

Re: [OMPI devel] RFC: add STCI component to OMPI/RTE framework

2014-05-27 Thread Edgar Gabriel
On 5/27/2014 2:46 PM, Ralph Castain wrote: > > On May 27, 2014, at 12:27 PM, Edgar Gabriel > wrote: > >> I'll let ORNL talk about the STCI component itself (which might >> have additional reasons), but keeping the code in trunk vs. an >> outside github/merc

Re: [OMPI devel] RFC: add STCI component to OMPI/RTE framework

2014-05-27 Thread Edgar Gabriel
tside your > organizations is going to build against it - so what did it > accomplish to push the code into the repo? > > Mind you, I'm not saying I'm staunchly opposed - just trying to > understand how it benefits anyone. > > > On May 27, 2014, at 11:28 AM, Edgar

Re: [OMPI devel] RFC: add STCI component to OMPI/RTE framework

2014-05-27 Thread Edgar Gabriel
> post: >> http://www.open-mpi.org/community/lists/devel/2014/05/14852.php > > ___ devel mailing list > de...@open-mpi.org Subscription: > http://www.open-mpi.org/mailman/listinfo.cgi/devel Link to this post: > http://www.open-m

Re: [OMPI devel] Wrong Endianness in Open MPI for external32 representation

2014-04-29 Thread Edgar Gabriel
art > > Tel: ++49(0)711-685-87203 > email: nietham...@hlrs.de > http://www.hlrs.de/people/niethammer > > > > ___ > devel mailing list > de...@open-mpi.org > Subscription: http://www.open-mpi.org/mailman/listinfo.cgi/devel >

Re: [OMPI devel] 1-question developer poll

2014-04-16 Thread Edgar Gabriel
because there's serious discussions afoot to switch > OMPI's main SVN repo to Git, and I want to get a feel for the current > landscape out there. > -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Scie

Re: [OMPI devel] Annual OMPI membership review: SVN accounts

2013-07-08 Thread Edgar Gabriel
O COMMITS IN LAST YEAR** > adkulkar: Abhishek Kulkarni > afriedle: Andrew Friedley **NO COMMITS IN LAST YEAR** > timattox: Tim Mattox **NO COMMITS IN LAST YEAR** > > U. Houston > = > edgar:Edgar Gabriel > vvenkatesan:Vishwanath Venkatesan > > Mellanox &g

Re: [OMPI devel] sbgp problem

2012-10-30 Thread Edgar Gabriel
as far as I can tell right now, yes, its the final thing... Thanks Edgar On 10/30/2012 2:05 PM, Ralph Castain wrote: > Grrbloody verb @##$@$. > > Okay, I'll make that edit. Is that the last thing required to fix this > problem? > > On Oct 30, 2012, at 11:57 A

[OMPI devel] sbgp problem

2012-10-30 Thread Edgar Gabriel
error: implicit declaration of function 'ompi_ibv_free_device_list' make[2]: *** [sbgp_ibnet_component.lo] Error 1 make[2]: *** Waiting for unfinished jobs make[1]: *** [all-recursive] Error 1 make: *** [all-recursive] Error 1 Thanks Edgar -- Edgar Gabriel Associate Professor Parallel Software Technol

Re: [OMPI devel] 1.7 rc4 compilation error

2012-10-30 Thread Edgar Gabriel
ter how I configure it. No earthly idea > what happened. > > Ignore these droids > > > On Oct 30, 2012, at 7:28 AM, Edgar Gabriel wrote: > >> ok, so a couple of things. >> >> I still think it is the same issue that I observed 1-2 days ago. Could &

Re: [OMPI devel] 1.7 rc4 compilation error

2012-10-30 Thread Edgar Gabriel
10/30/2012 8:29 AM, Edgar Gabriel wrote: > ok, I'll look into this. I noticed a problem with static builds on > lustre file systems recently, and I was wandering whether its the same > issue or not. But I'll check what's going on. > > THanks > Edgar > > On

Re: [OMPI devel] 1.7 rc4 compilation error

2012-10-30 Thread Edgar Gabriel
ild static > > I'm not sure what, if any, parallel file system might be present. In the case > that works, I just built with no configure args other than prefix. ompi_info > shows both romio and mpio built, but nothing more about what support they > built internally. > &

Re: [OMPI devel] 1.7 rc4 compilation error

2012-10-30 Thread Edgar Gabriel
ran fine. Also runs clean on > the Mac. However, in both those cases, I had left IO romio enabled. > > Now on odin, I always disable-io-romio. So I tried deliberately enabling it, > and everything works. So this appears to be something that the IO work has > broken. > > Edgar:

Re: [OMPI devel] 1.7 rc4 compilation error

2012-10-29 Thread Edgar Gabriel
e.am. As a result, it wasn't pulled to the tarball. >> >> Pavel (Pasha) Shamis >> --- >> Computer Science Research Group >> Computer Science and Math Division >> Oak Ridge National Laboratory >> >> >> >> >> >> >> On Oct 2

[OMPI devel] 1.7 rc4 compilation error

2012-10-26 Thread Edgar Gabriel
`/home/h2/gabriel/openmpi-1.7rc4/ompi/mca/bcol/iboffload' CC bcol_iboffload_module.lo CC bcol_iboffload_mca.lo CC bcol_iboffload_endpoint.lo CC bcol_iboffload_frag.lo In file included from bcol_iboffload_frag.c:16:0: bcol_iboffload.h:46:36: fatal

Re: [OMPI devel] [OMPI svn] svn:open-mpi r26934 - trunk/ompi/mca/io/ompio

2012-08-01 Thread Edgar Gabriel
; @@ -42,6 +42,7 @@ > > sources = \ > io_ompio.h \ > +io_ompio_nbc.h \ > io_ompio.c \ > io_ompio_component.c \ > io_ompio_module.c \ > ___ > svn mailing list > s...@open-mpi.org > http://www.open

Re: [OMPI devel] Warning in fcoll

2012-05-29 Thread Edgar Gabriel
tic_file_read_all’: > fcoll_static_file_read_all.c:74: warning: ‘sorted_file_offsets’ may be used > uninitialized in this function > > > > > ___ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel

Re: [OMPI devel] Trunk build problem

2012-02-28 Thread Edgar Gabriel
sorry, should be fixed with the last commit... Thanks Edgar On 2/28/2012 8:37 AM, Edgar Gabriel wrote: > I'll look into this... > > Thanks > Edgar > > On 2/28/2012 8:36 AM, Ralph Castain wrote: >> I tried to build the trunk this morning on a machine where the fc

Re: [OMPI devel] Trunk build problem

2012-02-28 Thread Edgar Gabriel
ain/openmpi-1.7a1/ompi/mca/fcoll/static/fcoll_static_file_write_all.c:929: > first defined here > > > Any suggestions? > Ralph > > > ___ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel

Re: [OMPI devel] [OMPI svn] svn:open-mpi r25966

2012-02-20 Thread Edgar Gabriel
--- >> +AC_DEFUN([MCA_ompi_fbtl_posix_CONFIG],[ >> +AC_CHECK_HEADER([aio.h], >> +[fbtl_posix_happy="yes"], >> +[fbtl_posix_happy="no"]) >> + >> +AS_IF([test "$fbtl_posix_happy" = "yes"], >> +

Re: [OMPI devel] poor btl sm latency

2012-02-16 Thread Edgar Gabriel
___ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel -- Edgar Gabriel Associate Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Hou

Re: [OMPI devel] RFC: adding OMPIO module and new parallel I/O frameworks to trunk

2011-08-25 Thread Edgar Gabriel
the code has been committed in r25079. Let us know if there are any issues, compilation problems etc. I also work on an FAQ entry as has been suggested on the teleconf last week. Thanks Edgar On 8/12/2011 3:09 PM, Edgar Gabriel wrote: > WHAT: add the ompio io module and new parallel

[OMPI devel] RFC: adding OMPIO module and new parallel I/O frameworks to trunk

2011-08-12 Thread Edgar Gabriel
Feedback is highly welcome. Thanks Edgar -- Edgar Gabriel Assistant Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, TX-77204, USA Tel: +1 (713) 743-3857

[OMPI devel] problems compiling new ROMIO with PVFS2 support

2011-05-20 Thread Edgar Gabriel
int ) Thanks Edgar -- Edgar Gabriel Assistant Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, TX-77204, USA Tel: +1 (713) 743-3857 Fax: +1 (713

Re: [OMPI devel] MPI_File_get_size fails for files > 2 GB in Fortran

2010-12-20 Thread Edgar Gabriel
values, and there is no implication in any document > I know of that it should be. > > Regards, > Nick Maclaren. > > > > ___ > devel mailing list > de...@open-mpi.org > http://www.open-mpi.org/mailman/listinfo.cgi/devel

Re: [OMPI devel] MPI_File_get_size fails for files > 2 GB in Fortran

2010-12-20 Thread Edgar Gabriel
> So the size is of type MPI_OFSET_KIND which is INTEGER*8 (signed). There is > still a mismatch between of C and the Fortran version (size_t vs. ssize_t on > my platform), but let's save this for later. > > george. > > On Dec 20, 2010, at 14:48 , Edgar Gabriel w

Re: [OMPI devel] MPI_File_get_size fails for files > 2 GB in Fortran

2010-12-20 Thread Edgar Gabriel
ematics Division, Stop 8911 >> 100 Bureau Drive >> Gaithersburg, MD 20899-8911 >> >> >> ___ >> devel mailing list >> de...@open-mpi.org >> http://www.open-mpi.org/mailman/listinfo.cgi/devel > >

Re: [OMPI devel] OMPI #2477

2010-07-13 Thread Edgar Gabriel
be > inside the communicator code). > > https://svn.open-mpi.org/trac/ompi/ticket/2477 > -- Edgar Gabriel Assistant Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524

Re: [OMPI devel] malloc(0) warnings

2010-05-06 Thread Edgar Gabriel
hu, 6 May 2010 16:12:30 -0500 (CDT) > Received: from localhost (localhost [127.0.0.1]) > by mail.hlrs.de (Postfix) with ESMTP id C959F680A01A; > Thu, 6 May 2010 23:12:26 +0200 (CEST) > X-Virus-Scanned: amavisd-new at hlrs.de > Received: from mail.hlrs.de ([127.0.0.1]) >

Re: [OMPI devel] RFC: revamp topo framework

2009-10-28 Thread Edgar Gabriel
(but simpler than) the coll framework. I've started an hg for this work: http://bitbucket.org/jsquyres/ompi-topo-fixes/ Comments? -- Edgar Gabriel Assistant Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Housto

Re: [OMPI devel] application hangs with multiple dup

2009-09-22 Thread Edgar Gabriel
it will be available in 1.3.4... Thanks Edgar Chris Samuel wrote: Hi Edgar, - "Edgar Gabriel" wrote: just wanted to give a heads-up that I *think* I know what the problem is. I should have a fix (with a description) either later today or tomorrow morning... I see that chang

Re: [OMPI devel] Deadlock with comm_create since cid allocator change

2009-09-21 Thread Edgar Gabriel
_COMM_WORLD, new_group, &testComm); MPI_Barrier(testComm); MPI_Finalize(); return 0; } ___ devel mailing list de...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/devel -- Edgar Gabriel Assistant Professor Parallel Software Techno

Re: [OMPI devel] application hangs with multiple dup

2009-09-16 Thread Edgar Gabriel
just wanted to give a heads-up that I *think* I know what the problem is. I should have a fix (with a description) either later today or tomorrow morning... Thanks Edgar Edgar Gabriel wrote: so I can confirm that I can reproduce the hang, and we (George, Rainer and me) have looked into that

Re: [OMPI devel] application hangs with multiple dup

2009-09-16 Thread Edgar Gabriel
there is a ticket on that topic already (#2009), and I just added some comments to that... Jeff Squyres wrote: On Sep 10, 2009, at 7:12 PM, Edgar Gabriel wrote: so I can confirm that I can reproduce the hang, and we (George, Rainer and me) have looked into that and are continue digging. I

Re: [OMPI devel] application hangs with multiple dup

2009-09-10 Thread Edgar Gabriel
eiver side), which seems to be consistent with two other bug reports currently being discussed on the mailing list. I could reproduce the hang with both sm and tcp, so its probably not a btl issue but somewhere higher. Thanks Edgar Thomas Ropars wrote: Edgar Gabriel wrote: Two short questions: d

Re: [OMPI devel] application hangs with multiple dup

2009-09-10 Thread Edgar Gabriel
de...@open-mpi.org http://www.open-mpi.org/mailman/listinfo.cgi/devel -- Edgar Gabriel Assistant Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, T

Re: [OMPI devel] [OT] Who's going to Helsinki?

2009-08-04 Thread Edgar Gabriel
long devel meeting, perhaps they might be motivated...? -- Edgar Gabriel Assistant Professor Parallel Software Technologies Lab http://pstl.cs.uh.edu Department of Computer Science University of Houston Philip G. Hoffman Hall, Room 524Houston, TX-77204, USA Tel: +1 (713

Re: [OMPI devel] compile error on trunk

2009-05-08 Thread Edgar Gabriel
ok, forget about it, mea culpa. Rerunning autogen can work wonders :-) Edgar Gabriel wrote: I have currently a problem compiling the trunk. configure runs through correctly, but when starting make I get the following error: gabriel@salmon:~/ompi/trunk> make make: *** No rule to make tar

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