Hello Sophie,
The issues with the server that hosts the readonly CVS repository should be
resolved with next day or two. Please try again then.
-Zeke
> On Mar 31, 2015, at 5:44 AM, Sophie Maingault
> wrote:
>
> Hi,
> I was trying to download the source-code by using this wiki page
> http:
Martin,
Thanks for the advice. I'll have a think about which approach to take.
Regards,
Kate
On Wed, Apr 1, 2015 at 2:24 AM, Martin Reuter
wrote:
> Hi Kate,
>
> first you can check (and fix) the surface in the base. They are mapped
> from there to the time points, so improving the base will
Hi Jenn
have you tried filling the lesions on the aseg.mgz before creating the
surfaces?
Bruce
On Tue, 31 Mar 2015, jennifer.fer...@alumni.ubc.ca wrote:
>
>
> From: jennifer.fer...@alumni.ubc.ca
> Sent: Tuesday, March
Dear Colleagues,
I'm having problem to process TRACULA.
I already processed the T1 imagens (recon-all) but I can't go further with the
DWI imagens.
I think that the problem is my image type.
I have 33 files (1 b0 and 32 different directions) and in the configuration
file I pointed to the first i
If this is the reference, than I think based on the ls -l output, it
is a pretty good guess that it was version 4.1.7
Of course, like Zeke said, this is a complete guess, but based on
plausible information.
HTH
D
On Tue, Mar 31, 2015 at 3:39 PM, Z K wrote:
> I think he's referring to the conven
I think he's referring to the convention used in the various
/usr/pubsw/packages libraries where "current" points to a version
number. For example as of right now:
/usr/pubsw/packages/fsl/current -> 5.0.7
But there is no real way of knowing the destination of that symlink at
May 1 2012. At lea
Other than someone's recollection, there is probably no verifiable means
for determining this information. Sending an inquiry to Martinos Center
Help Desk is your best bet.
-Zeke
On 03/31/2015 03:24 PM, Marco Loggia, PhD wrote:
> Hi all,
>
>
> If I wanted to find out what was the 'current' FSL
It may help to provide a bit more context e.g. the email/instructions
you where you found the reference to 'current' fsl version?
HTH,
D
On Tue, Mar 31, 2015 at 3:31 PM, Z K wrote:
> Other than someone's recollection, there is probably no verifiable means
> for determining this information. Send
Hi all,
If I wanted to find out what was the 'current' FSL version at the Martinos
Center on May 1, 2012, how would i do it?
Thanks!
Marco
__
Marco L. Loggia, PhD
Assistant Professor of Radiology
Harvard Medical School
Massachusetts General Hospital
149 Thirteenth
Thanks so much! That did the trick.
Taylor Elrod
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addr
From: jennifer.fer...@alumni.ubc.ca
Sent: Tuesday, March 31, 2015 11:04 AM
To: freesurfer@nmr.mgh.harvard.edu
Subject: Accounting for lesions misclassified as non-brain matter
Hi there,
I am having an issue with stroke lesions that border onto the cortex being
mi
Hi Kate,
first you can check (and fix) the surface in the base. They are mapped
from there to the time points, so improving the base will have an effect
on both time points.
checking surface placement can only be done by opening the images and
surfaces manually. If you want to avoid that, yo
Hello,
I am interested in using TRACULA for my data, but I have a few questions about
modifying the dmrirc configuration file. I have already conducted eddycorrect,
bet, and dtifit in FSL, registration of T1 and dti using ANTs, and I have also
registered individual subject data to a template
Not sure what is going wrong with the 1st cmd, but the 2nd has a double
dash just before Sess49 (--s) that is causing the problem
doug
On 03/31/2015 07:55 AM, std...@virgilio.it wrote:
> Hi list,
>
> I'm performing the FS-FAST analysis.
>
> Some months ago, I have already preformed this analysis
Hi list,
I'm performing the FS-FAST analysis.
Some months ago, I have already preformed this analysis on some subjects
without problem.
Now, I have added some subjects. When I rerun the analysis i have these error:
for isxconcat-sess -sf sessidlist —analysis fc.lthalseed.surf.lh -contrast
L_Tha
Hello Douglas,
I have downloaded a new license and it successfully runs !
Best regards,
Matthieu
2015-03-31 12:39 GMT+02:00 Matthieu Vanhoutte :
> Hello Douglas,
>
> I have download the new version of mri_surf2vol you supplied me, and have
> copied it in the FS5.3 /bin installation files.
>
>
Hello Edgar,
Could you upload the whole subject folder? I could try to run it through
recon all here and see if I can reproduce the error. It would also allow
me to look through your log files to see if I can spot anything that
could be causing this issue.
You can use FileDrop2.0 if the dire
Hello Douglas,
I have download the new version of mri_surf2vol you supplied me, and have
copied it in the FS5.3 /bin installation files.
But when I tried to launch with my precedent command lines, the error
message appeared :
*gdiagno = -1Using identity matri
Hi,
I was trying to download the source-code by using this wiki page
http://freesurfer.net/fswiki/ReadOnlyCVS.
I received the password and the login worked well but when I tried to download
the "dev" directory it didn't work. Here the error message :
cvs checkout: failed to create lock directory
Hi all,
Sorry for the repost, was just wondering whether someone might have some
input regarding this issue.
Thanks!
Niels
On Thu, Mar 26, 2015 at 12:10 PM, Niels Bergsland
wrote:
> Hi all,
> I have run into an issue that I am having trouble correcting.
>
> http://imgur.com/a/4KqpJ
>
> I have c
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