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Dear Vale,
using the GUI of SPM you cannot get a FWHM of lower than 30. You have to save
the batch to disk, load it in MATLAB and change the parameters to your liking.
In case this sounds too complicated, you can use part of a reconstruction
pipelin
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Sorry for that. psf is zero. Thank you very much Douglas.
Kate
On Thu, Feb 20, 2020 at 3:55 PM Douglas N. Greve
wrote:
> yes, they are, thought I don't know why you include "psf6" in the output
> folder.
>
> On 2/20/2020 3:36 PM, Kate Marvel wrote:
Yes, though I might demean all the covariates. For thickness, you can run
mri_glmfit --surf fsaverage lh --y lh.thickness_20.fsavg.mgh --osgm
--eres-save --o thickness-demean
then use thickness-demean/eres.mgh as the PVR
On 2/20/2020 9:13 AM, Raffaele Dubbioso wrote:
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Don't use gender as a continuous variable. You need four classes
(TLE-Male, TLE-Female, etc) and change the contrast to reflect it,
otherwise I think it looks ok. Load the sig.mgh file into freeview (or
the tksurferfv freeview wrapper)
On 2/19/2020 10:31 PM, 邓刊 wrote:
External Emai
yes, those commands look right, except I think you don't need to specify
--surfreg my_avg_subject.sphere.reg It will automatically do this for you
On 2/19/2020 1:44 PM, Marina Fernández wrote:
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Hi experts, I am running the following command to create de ave
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Hi there,
Reposting this message (below). Would appreciate any guidance you can provide.
Thanks,
Lara
From: freesurfer-boun...@nmr.mgh.harvard.edu
on behalf of Lara Foland-Ross
Sent: Friday, February 7, 2
yes, they are, thought I don't know why you include "psf6" in the output
folder.
On 2/20/2020 3:36 PM, Kate Marvel wrote:
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Dear All,
I would like to perform no partial volume correction of PET using
PETSURFER.
The steps followed in doing this is shown b
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Dear All,
I would like to perform no partial volume correction of PET using
PETSURFER.
The steps followed in doing this is shown below:
gtmseg --s Patient_1
mri_concat Patient_1_pet.nii.gz --mean --o Patient_1_pet_tac_vol_mean.nii.gz
mri_coreg --s
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Hi Bruce,
Thanks for the reply. What are the commands should I try?
mri_segment brainmask.mgz wm.mgz -wlo 90
and after:
recon-all -autorecon2-wm -autorecon3 -subjid
???
The images are scanned in a GE PETMR 3T. MR hardware configurati
Hi Bruno
it looks to me like there is very little gray/white contrast, which is
the root of your problem. YOu could try limiting the intensity ranges in
the segmentation and surface deformation steps using expert options (e.g.
-wlo for mri_segment). We can also help improve the acquisition. If
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Hello,
You can follow
https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/TroubleshootingDataV6.0 to
correct your defects.
Thanks and Regards
Nayan Wadhwani
On Thu, Feb 20, 2020 at 8:04 PM Bruno Pastorello <
bruno.pastore...@hc.fm.usp.br> wrote:
>
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Dear FS team,
in my analysis I'd like to correlate two variables such as cortical
myelination and neurophysiological metrics, regressing-out thickness and
age of the subjects. I have only one group.
My FSGD file should be:
GroupDescriptorFile 1
Title
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Dear Freesurfer experts,
I have compared the PVC uptake values of gtm.stats with the values of
gtm.nii.gz (that I loaded with the function load_nii in matlab). I realized
that the values in matlab are transposed, i. e., the first value in
gtm.stats is
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*Thank you Dr. Greve for your answer*
I checked all about your comment.
I have questions more.
1. I found that volumes or counts in gtm.stats.dat are for native PET
space. If co-registered PET onto corresponding MRI(i.e. MRI space) is available
usin
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