Re: [Freesurfer] Freeview problem - can't see surfaces, hidden behind volumes

2022-02-20 Thread Harriet Dempsey-Jones
-server-release-notes%2F%3Fsource%3DFastX3-3.2.34 From: freesurfer-boun...@nmr.mgh.harvard.edu on behalf of Wang, Ruopeng Date: Saturday, 19 February 2022 at 1:28 am To: Freesurfer support list Subject: Re: [Freesurfer] Freeview problem - can't see surfaces, hidden behind volumes

Re: [Freesurfer] Freeview problem - can't see surfaces, hidden behind volumes

2022-02-18 Thread Wang, Ruopeng
, 18 February 2022 8:25 AM To: Freesurfer support list mailto:freesurfer@nmr.mgh.harvard.edu>> Subject: Re: [Freesurfer] Freeview problem - can't see surfaces, hidden behind volumes It sounds like a remote display issue. Are you connecting from a Windows machine? If so what x-term sof

Re: [Freesurfer] Freeview problem - can't see surfaces, hidden behind volumes

2022-02-17 Thread Wang, Ruopeng
It sounds like a remote display issue. Are you connecting from a Windows machine? If so what x-term software do you use? Ruopeng On Feb 17, 2022, at 5:15 PM, Harriet Dempsey-Jones mailto:h.dempseyjo...@uq.edu.au>> wrote: External Email - Use Caution Hi there, I am having a weird p

Re: [Freesurfer] freeview problem on Linux RHEL 7-4 libGLU.so.1

2018-10-01 Thread Felipe Picon
External Email - Use Caution Dear Avner and fellow freesurfer users, I've just came across the same issue testing QDEC after the installation of Freesurfer 6.0 using FEDORA 28 “qdec.bin: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such fil

Re: [Freesurfer] Freeview problem: ROIs showing in wrong slice when loaded with certain volumes

2017-12-06 Thread Ruopeng Wang
Hi Sara, Would it be possible to send me the files and the freeview command you ran? Best, Ruopeng > On Dec 6, 2017, at 6:16 PM, Sims, Sara A wrote: > > Hello, > I am having an issues with freeview ROIs. When I use the command line to load > the orig and the ROIs by themselves they display c

[Freesurfer] Freeview problem: ROIs showing in wrong slice when loaded with certain volumes

2017-12-06 Thread Sims, Sara A
Hello, I am having an issues with freeview ROIs. When I use the command line to load the orig and the ROIs by themselves they display correctly, however when I display the orig volume and the volume versions of the ROIs- the label ROIs suddenly change to be in the wrong plane. I have done this s

[Freesurfer] freeview problem on Linux RHEL 7-4 libGLU.so.1

2017-08-15 Thread Avner Meoded
Hello all, I installed the latest version for Linux I get this message when trying to run an example: "freeview.bin: error while loading shared libraries: libGLU.so.1: cannot open shared object file: No such file or directory" I installed the missing library and now it is in /usr/local/

Re: [Freesurfer] freeview problem with w-file overlay

2017-02-06 Thread Bruce Fischl
sure, use save_mgh to write them to a .mgz or .mgh file cheers Bruce On Mon, 6 Feb 2017, Björn Herrmann wrote: Dear list, I would like to use freeview to display my activations patterns. I source-localized MEG data in matlab using the freesurfer standard brain as a source space. I saved the

Re: [Freesurfer] freeview problem with w-file overlay

2017-02-06 Thread Douglas N Greve
You can write it out as a curv (write_curv.m), or you can use mri_surf2surf to convert from w (aka paint) to curv or mgh format On 02/06/2017 01:33 PM, Björn Herrmann wrote: > Dear list, > > I would like to use freeview to display my activations patterns. I > source-localized MEG data in matlab

[Freesurfer] freeview problem with w-file overlay

2017-02-06 Thread Björn Herrmann
Dear list, I would like to use freeview to display my activations patterns. I source-localized MEG data in matlab using the freesurfer standard brain as a source space. I saved the source localization as a w-file, that is, as an overlay. I used to display the overlay in tksurfer, but I cannot adj

Re: [Freesurfer] freeview problem

2013-08-18 Thread Salil Soman
Thank you Zeke. I am trying to run freeview remotely and display locally on a machine (using Xming). The computer from which I am connecting can successfully run freeview from a different ubuntu 13 machine (one which does not have a cuda graphics card / cuda drivers). When I run glxgears (required

Re: [Freesurfer] freeview problem

2013-08-16 Thread Z K
Hello Sal, Are your trying to run freeview remotely and display locally machine? If you type 'glxgears' at the command line does a window popup displaying spinning gears? -Zeke On 08/16/2013 05:55 AM, Salil Soman wrote: > Hi, > > When I try to run freeview on my ubuntu 13 machine, running the

[Freesurfer] freeview problem

2013-08-16 Thread Salil Soman
Hi, When I try to run freeview on my ubuntu 13 machine, running the nvidia 5.0 cuda drivers, I get the following errors: Xlib: extension "NV-GLX" missing on display "localhost:10.0". Xlib: extension "NV-GLX" missing on display "localhost:10.0". Xlib: extension "NV-GLX" missing on display "loca

[Freesurfer] Freeview problem

2012-04-13 Thread carlo cotugno
I'm a newbie with FreSurfer and Linux. I'm following Longitudinal Processing-Tutorial. now I have only files of tutorial data set and I don't have any other file to test. I can run Freeview and I can load volume from terminal and from interface, but when I try to load surfaces (from terminal with

Re: [Freesurfer] Freeview problem I can't see volumes

2012-04-13 Thread Ruopeng Wang
Would it be possible to send us the surface file that crashes freeview? Ruopeng On 4/13/12 10:06 AM, carlo cotugno wrote: I'm a newbie with FreSurfer and Linux. I'm following Longitudinal Processing-Tutorial. now I have only files of tutorial data set and I don't have any other file to test. I

Re: [Freesurfer] Freeview problem I can't see volumes

2012-04-13 Thread carlo cotugno
I'm a newbie with FreSurfer and Linux. I'm following Longitudinal Processing-Tutorial. now I have only files of tutorial data set and I don't have any other file to test. I can run Freeview and I can load volume from terminal and from interface, but when I try to load surfaces (from terminal with

Re: [Freesurfer] Freeview problem I can't see volumes

2012-04-13 Thread Ruopeng Wang
Does this happen with every volume you load or just that specific one? What happens if you change slices? Are you viewing it in the 3D view? Ruopeng On 4/13/12 3:34 AM, carlo cotugno wrote: Dear FreeSurfer experts, I'm sorry but I have another problem..now when I load a surface (freeview

Re: [Freesurfer] Freeview problem I can't see volumes

2012-04-13 Thread Bruce Fischl
Hi Carlo that command line loads a volume, not a surface. Do you load the surface from the interface? You can do it from the command line with -f name>. Not sure about your problem, but we'll need more details about what you did cheers Bruce On Fri, 13 Apr 2012, carlo cotugno wrote: Dear

[Freesurfer] Freeview problem I can't see volumes

2012-04-13 Thread carlo cotugno
Dear FreeSurfer experts, > I'm sorry but I have another problem..now when I load a surface (freeview -v > OAS2_0001_MR1.long.OAS2_0001/mri/norm.mgz)Freeview starts but i can't see the > image and only when I change for example values in opacity or window, the > image appears but immediately di