<http://informatics.gpcnetwork.org/trac/Project/ticket/296>
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... I don't know
about radiation, endocrine or hormonal therapy.
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| Resolution:
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Blocking: |
---+--
Changes (by dconnolly):
* milestone: cohort-char1 => data-quality-q2
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CMH.
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n from UIOWA would be ideal, though we understand they're all
set.
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familiar with the specific
policies and protocols of the site, rather than questions Cerner can
answer.
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x27;s responses were submitted as KUMC
with a note at the bottom of the survey clarifying that they are for CMH.
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, bradley-mcdowell@… (removed)
Comment:
See also UTHSCSA scripts: ticket:217#comment:18
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(ticket:240#comment:6), as well as shared development costs
with SCILHS going forward.
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ve got some code:
[https://bitbucket.org/jvanschyndle/gpc-2015-q2-qa-
files/commits/4d7def85af3604448c0aac7dff5bbdeecfcc1948 4d7def8]
Who wants to try it out?
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hat database system is used to hoset and extract the PCORnet data
at your site||Oracle||
||(7) What SAS version and modules are available at your site?||Campus SAS
license||
Please complete ASAP.
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Dictionary is not specific enough
to provide this.
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-+-
Comment (by bzschoche):
As updated on the 7.1.15 Breast Cancer Survey webinar, UNMC and UTSW are
also approved for mailing.
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ohort characterization.
re #296, Russ put together EMR_BC_Criteria [7-2-2015] [rwait...@kumc.edu]
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t getting stage, receptor status from the EMR isn't
feasible in our timeframe.
Otherwise, I think I have what I need to build a query (#295) including
treatment.
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up. Patrick sent mail June 30. Also, Tom Mish called me to catch up on
things and said he'd bring this to Umberto's attention.
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Batch modification to #154, #117, #166, #161, #162 by dconnolly:
milestone to data-quality-q2
Comment:
moving popmednet tickets to milestone:data-quality-q2
phasing out milestone:data-agg1
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compiled to date. We are waiting on information from two
sites (Medical College of Wisconsin and University of Iowa).
[table]
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---+--
Comment (by btaylor):
MCW information added to the google doc
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Changes (by btaylor):
* owner: gkowalski => Prakash-Nadkarni@…
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er field.
:-/
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0. UTSW - already collecting responses as of 23 June
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home state based upon
what I see in the query instructions).
Is it the intention that this study be limited to a site's home state? Or
should it be constrained by geolocation data (50 miles from center or
similar?)
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ntioned, this probably does not translate to your institution.
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below):
{{{#!python
def loadID(self, id_loader):
...
--and upper(pd.state_cd) = '&&state_long'
}}}
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Greate
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Comment (by susandm):
Has this call been scheduled?
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Comment (by susandm):
Thanks! I wondered and wanted to attend but could not find the call in
info.
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LP29693-6\LP7784-4\1558-6\ (1558-6: Fasting glucose
[398797 facts; 150656 patients])
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feasibility
requests.
Please update this ticket when your institution has completed the queries
and sent the numbers with estimated time to Tamara.
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---+---
Changes (by tmcmahon):
* cc: meiliu (added)
* status: new => accepted
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s.
Thanks!
Laurel
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d...@listserv.kumc.edu/msg01992.html. Because UTHSCSA is not using email
for the obesity survey, '''I'd appreciate it if another site could
respond''' about how they pull parental email data.
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amter:
* ''Record format: The file to be uploaded has its records stored as
separate **Columns**''
-TM
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EDCap project to upload/import the file? Can you
advise? Thanks.
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Tool now.
As a side note: ensure that Record ID is set to all upper case. I noticed
that after running the script, mine was "Wisc" instead of "WISC". A simple
edit corrected that.
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`. Are we supposed to change this to the
age range concepts used at our site?
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ange the age
ranges, Angela?
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gela Bos, the tracker seems stable as of
b85e0b6 Jul 15.
We can re-open this if evaluation by Hubert or anyone else turns up
critical issues.
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ted format. Please try again." Fixed.
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), so I missed it. Sorry, that's been
fixed.
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joining results and SQL was
selecting the first result it found.
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10. UTSW - already collecting responses as of 23 June
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tient has email address Y/N" to our
demographics load would be a handy thing.
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059''
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/1b9cf89ef8bdec77c474e2ed8adfe1b6e0ac910a/Q2_2015_GPC_QA.sql?at=default
Q2_2015_GPC_QA.sql], `/* Encounters with No ICD 9 Code */` uses the result
of `'num_valid_icd9'` which hasn't yet been populated. Am I missing
something?
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be enrolled in
'''December 2015'''.
Work on governance continues.
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nder what LOINC code people are using. The top google hit is:
[http://r.details.loinc.org/LOINC/4548-4.html?sections=Comprehensive
4548-4 Hemoglobin A1c/Hemoglobin.total in Blood]. I haven't checked
babel.
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and which of the 9 are the 8.
Tamara, Brittany, I don't see anything related to breast cancer surveys
that merits discussion in SoftwareDev this week (tomorrow). Let us know if
you prefer otherwise.
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ould you change the age
ranges, Angela?
Sorry, please allow me to retract the question. It was based on a faulty
assumption after looking at the input file but before looking at the SQL
code.
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by Wednesday. Sorry, results have
delayed by my attendance at the PMN conference.
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st
)m;
exit
}}}
The other one that does not complete is the same query except for weight.
In the above example using Oracle's MEDIAN function will help cure some of
the ills along with factoring out some of the subselects. I will rewrite
and send feedback for these two in parti
Tom says next time.
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s not null
UNION
SELECT 'NULL or missing' AS Statistic, COUNT(*) AS
wt FROM Vital WHERE wt IS NULL
UNION
SELECT 'record_n' AS Statistic, COUNT(*) AS wt
FROM Vital WHERE wt IS NOT NULL
)csv
ORDE
: |
---+---
Comment (by tmcmahon):
Patient counts received from UTSW.
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hope to be finished
this week.
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\\[a9cef5738229] Angela Bos
85. add config option to access clarity tables over a database link
\\[35fe2794a4f0] Dan Connolly
https://bitbucket.org/DanC/survey_tracker/overview
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://bitbucket.org/bos_uthscsa/survey_tracker/overview default repo].
You can get some overview stats by running this:
`$ python tracker_load.py stats`
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.
How about you send it to gpc-dev@listserv.kumc.edu?
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#x27;'#tbd'' - Better support for QA results on Oracle Server
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re that we have full ethnicity and
race questions tackled.
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---+---
Comment (by mish):
Counts and time spent sent to Tamara from WISC.
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inserted the TABLE_ACCESS rows twice. I hope that's not too much
of a distraction.
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_
ntified.
This should suffice for an initial investigation, but I suppose we need to
mix in all the stuff from #204 before it's finished.
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Grea
chemo meds from MCRF and the rest from KUMC. Is
that an issue? We'll see.
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s complete.
Take Deux, here we go !
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Comment (by gbushee):
MCW counts and times sent to Tamara today.
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ee fit, but this is
done to my satisfaction.
If you think it's worth more group attention, go ahead and re-open it.
For follow-up work, see milestone:data-quality-q3
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<http://informatics.gpcnetwork.org/trac/Project/ticket/291#comment:28>
gpc-
gpcnetwork.org/trac/Project/ticket/308#comment:5>
gpc-informatics <http://informatics.gpcnetwork.org/>
Greater Plains Network - Informatics
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ttp://informatics.gpcnetwork.org/trac/Project/ticket/80#comment:29>
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-sharing | Resolution:
Keywords: security | Blocked By: 79
Blocking:|
--+-
Changes (by dconnolly):
* owner: mish => bzschoche
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/80#comment:3
d'
-e '/^\s*$/d' > $MYFILE
}}}
The scripts are running once more. There may be more elegant solutions,
but `sed` works.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/240#comment:24>
gpc-informatics
. Closing ticket.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/166#comment:11>
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:| Blocked By: 209
Blocking:|
--+--
Changes (by kwanta):
* status: reopened => closed
* resolution: => fixed
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/166#comment:12>
gpc
twork.org/trac/Project/ticket/327#comment:2>
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'll create a ticket for George.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/327#comment:3>
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er teams won't have for some
time.
--
Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/191#comment:7>
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Ticket URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/191#comment:8>
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URL:
<http://informatics.gpcnetwork.org/trac/Project/ticket/80#comment:31>
gpc-informatics <http://informatics.gpcnetwork.org/>
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