Henry
I just checked the most recent Safari Developer Preview (32), running under
Sierra.
Release 32 (Safari 11.0, WebKit 12604.1.23.0.4)
Java is supported. I’ve sent you two screenshots showing this.
I provide this only for clarity. I share your concern that Apple may very
Dear all
I am trying to take some pages created more than 5 years ago in Jmol and
bring them up to modern JSmol/Jmol standards. I’m now using the most recent
Jmol release, and using the Jmol2.js adapter routines. I’ve got that running
fine with a simple test page, but have not been
If I might interject - code signing and the lot should be viewed as a short
term (and poor) solution to this problem.
First, I'd like to thank Bob and all of you for moving in the javascript
direction, away from Java. Absent in this discussion is a thread ongoing about
the security threats
Dear Paul and other Jmolers,
Yes, I would be delighted to provide the software, and any other guidance,
for setting up your own Molecular Playground. A description of the project and
basic installation guidelines can be found at http://molecularplayground.org.
My goal is to have the software
On May 31, 2013, at 9:49 AM, jmol-users-requ...@lists.sourceforge.net wrote:
Message: 3
Date: Fri, 31 May 2013 11:35:48 -0500
From: Robert Hanson hans...@stolaf.edu
Subject: Re: [Jmol-users] Wikis using JSMol?
To: jmol-users@lists.sourceforge.net
jmol-users@lists.sourceforge.net
Daniel
JSmol for the following seems to be loading on my iPhone, but I'm getting
the error:
Error reading the file at line 166
REMARK 2901555 X,Y,Z
TypeError: 'null' is not an object
for file http://biology.kenyon.edu/BM
type Pdb
-
Craig Martin
On Mar 25, 2013, at 3:24 PM,
issue?
I'm certain of the original error - even loaded it twice, with same error.
Craig
On Mar 25, 2013, at 4:13 PM, jmol-users-requ...@lists.sourceforge.net wrote:
Message: 1
Date: Mon, 25 Mar 2013 15:37:22 -0700
From: Craig T Martin ctmar...@chem.umass.edu
Subject: Re: [Jmol-users] Jmol
Confirmed on my Mac with Mountain Lion, despite the relaxation of security
noted below
And yes, no problems with Chrome or FireFox - only Safari 6
Error message is:
You do not have Java applets enabled in your web browser, or your browser is
blocking this applet.
Check the warning message from
Bob and Kevin
The page DOES work for me using Safari on a Mac (Lion 10.7.3 with
yesterday's Java update). It also DOES work with FireFox and Chrome (latest of
both).
UPDATE --- Just read the next digest (came while I was writing). Yes, I do
have the Dev Tools showing and do have WebGL
for Jmol,
but I appreciate that it is both big and a challenge.
Craig Martin
Message: 2
Date: Fri, 30 Mar 2012 08:53:35 -0500
From: Robert Hanson hans...@stolaf.edu
Subject: Re: [Jmol-users] Jmol for iPads?
Absolutely.
On Fri, Mar 30, 2012 at 8:01 AM, Craig T Martin cmar
Wow. I've stepped into (and probably added fuel to) a firestorm.
I'd like to suggest that this is not the forum for arguing the merits of iOS vs
Android. Some of us are a bit fanatical about iOS (OK, I'm one of them), and
some fanatical about Android. But we're all unified in being fanatical
Greetings,
I've aligned a good number of different structures of T7 RNA polymerase at
various stages of transcription and then set them all as individual models in
one file. Thus, when I select an active site residue for example, and color it,
it applies across models. I can then set up a
While we're talking memory allocation, and with respect to:
And unfortunately the memory of applets whose window/tab was closed
it not always release
For the stuff that I'm doing, I've known for some time that after
loading (and closing) various windows, Jmol eventually stops working
While we're talking memory allocation, and with respect to:
And unfortunately the memory of applets whose window/tab was
closed it not always release
For the stuff that I'm doing, I've known for some time that after
loading (and closing) various windows, Jmol eventually stops
working
Message: 1
Date: Wed, 28 Nov 2007 08:44:30 +
From: David Leader [EMAIL PROTECTED]
Subject: Re: [Jmol-users] new.htm updated
To: jmol-users@lists.sourceforge.net
Message-ID: [EMAIL PROTECTED]
Content-Type: text/plain; charset=US-ASCII; delsp=yes; format=flowed
Bob wrote:
I've updated
Greetings (again, already)
I've just found a fix for the problem I posted yesterday.
I am trying to develop a WEB page that will display a Jmol
image and then have two sections along the side. In one section,
the user can enter full HTML text into a form field, including
Jmol.js
Greetings,
I am trying to develop a WEB page that will display a Jmol image
and then have two sections along the side. In one section, the user
can enter full HTML text into a form field, including Jmol.js calls
(such as 'jmolButton'). The other panel can then load the code from
the
Greetings,
I have a question regarding viewing different models of a protein.
If I have file containing multiple models of the same protein, I can
issue commands to select and color different regions, for example,
and those commands works across all models.
If I issue a monitor
Very cool. Works fine on my system-up-to-date Mac.An issue though. At least in your current implementation, with sync "on" all align to the same intrinsic reference frame. That's desirable for some situations. However, if I have for example coords for A-form and D-form DNA, I'll want to
On Feb 15, 2006, at 11:30 PM, jmol-users-
[EMAIL PROTECTED] wrote:
Message: 3
Date: Wed, 15 Feb 2006 18:01:57 -0600
From: Bob Hanson [EMAIL PROTECTED]
Subject: Re: [Jmol-users] applet -- callback brainstorming
.
It's certainly an interesting challenge -- the goal, to provide a
On Feb 9, 2006, at 11:33 PM, [EMAIL PROTECTED] wrote:Message: 4 Date: Thu, 09 Feb 2006 13:07:47 -0600 From: Bob Hanson [EMAIL PROTECTED] To: jmol-users@lists.sourceforge.net Subject: [Jmol-users] applet -- callback brainstorming Reply-To: jmol-users@lists.sourceforge.net I'm looking at the Jmol
On Feb 10, 2006, at 1:58 PM, [EMAIL PROTECTED] wrote:I don't see a difference whether I say monitor 2087 2088 or monitor ([LIP]3:A.O5) ([LIP]3:A.O6) Oh, sure. OK. I don't know that we are headed that way wth the monitor command, because there are some programming issues with putting two atom
Folks,For those of you trying to convert from CHIME to Jmol, I offer the following modest resource: http://www.chem.umass.edu/people/cmartin/Jmol/Development/CHIME2Jmol.htmlIt presents a simple form that takes HTML code containing CHIME instructions and tries to convert them to equivalent Jmol
In the category of wish lists, may I propose the following?
Currently monitor (measure) uses AtomNo for each of its parameters.
As I develop a single page to service an Applet that can dynamically
load different, related structures,
the monitor command, of course, is less useful. The S
First, a big thanks to Bob for his tip on including MessageCallBack.
It's working great.
--
Regarding the message header above, I have a project I'm working on
that needs to be run both locally and from the WEB. I'd like to
include the ability to load a remote structure, as you
Date: Wed, 28 Sep 2005 09:35:43 -0500
From: Bob Hanson [EMAIL PROTECTED]
To: jmol-users@lists.sourceforge.net
Subject: [Jmol-users] detecting offline activity
Reply-To: jmol-users@lists.sourceforge.net
An interesting question! Right, now that you can have a page local and
still access anything
ssageCallBack and PickCallBack in my application. Is it possible to add two optional parameters to the jmolApplet function, to allow specification of these routines? Craig T Martin[EMAIL PROTECTED]
I must weigh in here. I'll be surprised if the hundredths place has reasonable significance in any protein crystal structure. Indeed, the tenths decimal place is likely weak in many structures. Remember also that in a distance measurement the uncertainty doubles.We do a disservice to the novice
Whoops! Don't know where I got *X as a chain identifier, but it's been
working for me (until now) for years! I will switch the proper syntax!
Craig
--On March 21, 2005 5:25:42 PM -0500 Eric Martz [EMAIL PROTECTED]
wrote:
Hi, Craig,
The Chime syntax for selecting chain 4 is select :4, not
Greetings,
I've been looking at the ribosome structures and am having trouble with
memory limit issues in Safari on the Mac (latest updates for everything). I
have not been hitting this limit with Mozilla on the Mac (don't know about
others). Specifically, I can load the molecule once, but
For my current needs, bumping the zoom up another 5X from whatever it is
currently would probably suffice, but others might need more. At the
moment, the ribosome is the biggest structure I've looked at, but of course
with progress, that will change.
thanks,
Craig
Message: 9
Date: Wed, 9 Mar
Bob,
The need to dynamically size is one of the reasons that my JmolShell page
is written mostly on the fly via Javascript. But my implementation isn't
perfect in that the box is sometimes a bit too big or too small, depending
on the browser. If anyone has tips on this Javascript issue, I'm
Angel,
I'll keep this short, as I've posted before, but you might want to look
at:
http://www.chem.umass.edu/~cmartin/JmolShell
This is a project originally done in CHIME with frames, now done in Jmol
with SPAN etc. It provides pretty much the same functionality I used to
have with
First, thanks to Miguel for his help in getting my JmolShell package
together. Briefly, this package is for use by students in a Biomolecular
Structure course in the preparation of Jmol-based presentations on their
favorite protein. It is trying to be as user-friendly as possible without
--On Monday, September 13, 2004 12:06 PM -0400 Miguel [EMAIL PROTECTED]
wrote:
Your file Support/JmolShell.js has some bad characters in it on lines 111
and 112. That prevents me from running.
Hmmm
The code around there is:
===
// Used by HelpHTML definition (only)
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