Developers-
Thanks for exploring the callback options. In answer to the
questions posed,
>a) Do you implement callbacks? If so, which ones?
I use pickcallback to identify atoms for color changes in lecture
graphics. I also use the pickcallback function to trigger various JS driv
AS A USER, WHAT DO YOU WANT?
a) Do you implement callbacks? If so, which ones?
yes message and pickcallback.
message callback to show messages in textarea and pickcallback to link
applet with an alignement or to launch a cgi script on residue
selection.
see at http://pig-pbil.ibcp.fr/cgi-bin/mag
> It's certainly an interesting challenge -- the goal, to provide a
> "snapshot" of the state of the system.
[snip]
>
> Let's see what Miguel thinks.
Miguel is explicitly sitting on the sidelines to watch this discussion.
At one extreme, RasMol supports this in a very simplistic way ... select
ea
[EMAIL PROTECTED] wrote:
The same approach could also be used to build the script for a full
dump. Instead of using the selected atoms, the atoms with the same
properties could be grouped in a first step. Then the described approach
could be used for each of these groups. I know that I hav
Bob Hanson wrote:
Rolf Huehne wrote:
unreliable. If the interface could recognize any selection change and
then ask Jmol for the current selection this would simplify that a lot
and make it much more reliable.
The challenge here would be providing anything other than a purely
atom-by-atom sele
beats me, the code couldn't possibly have let it, as the call wasn't
there!! Let's not pursue it
Rolf Huehne wrote:
Bob Hanson wrote:
because I just fixed it.
I should have written "Why did it still work in Firefox with Linux?",
because it already worked there even hours before you to
Bob Hanson wrote:
> because I just fixed it.
I should have written "Why did it still work in Firefox with Linux?",
because it already worked there even hours before you told in your
response to Dan that you will look into it.
Regards,
Rolf
>
> [EMAIL PROTECTED] wrote:
>
>> Quoting Bob Hanson <[E
because I just fixed it.
[EMAIL PROTECTED] wrote:
Quoting Bob Hanson <[EMAIL PROTECTED]>:
Thanks, Dan. Well, I see I "broke" right-mouse click on the prototype.
It's not a sync issue, because it's broken even with just one applet
on a page and no JavaScript. I'll look into it.
But if you
Rolf, a few comments interspersed below, and more to come after I
synthesize what the responses have been to these questions.
Rolf Huehne wrote:
b) What WOULD you use if you had it available?
What currently is missing in Jmol is the possibility to dump the current
display state (renderin
Hi Bob,
I highly appreciate your efforts regarding this issue. I have not had
the time yet to think more deeply about this. So below you will find
only some of my first thoughts.
Bob Hanson wrote:
> a) Do you implement callbacks? If so, which ones?
Currently I only implemented message callback t
Quoting Bob Hanson <[EMAIL PROTECTED]>:
Thanks, Dan. Well, I see I "broke" right-mouse click on the prototype.
It's not a sync issue, because it's broken even with just one applet
on a page and no JavaScript. I'll look into it.
But if you broke it, why does it still work in Firefox with Lin
Thanks, Dan. Well, I see I "broke" right-mouse click on the prototype.
It's not a sync issue, because it's broken even with just one applet
on a page and no JavaScript. I'll look into it.
Dan Kirshner wrote:
WinXP, Firefox 1.5. First time: molecule didn't display in top-right
applet (althoug
Bob Hanson wrote:
> More reports, please. If you have access to JavaScript console or Java
> Console and it's not working, please check there. It might be just a
> communication issue.
>
At the moment I have no time for more (but I'll check more detailed
later), just the javascript error message f
WinXP, Firefox 1.5. First time: molecule didn't display in top-right
applet (although click and drag there did rotate the other three!).
Second time: all four sync'd. Both times: no right-click effect, no
JavaScript Console messages, no text below applet (except "Disclaimer"
link).
Bob Hanso
More reports, please. If you have access to JavaScript console or Java
Console and it's not working, please check there. It might be just a
communication issue.
Rolf, what do you see on those other pages? Is the polling working
there? My guess is these pages mess up with identifying the applet
Bob Hanson wrote:
> OK, I'm making my way through the resonses here. In the mean time I
> have implemented (another) prototype that I would like people to take
> a look at. See the files in
>
> http://www.stolaf.edu/people/hansonr/jmol/test/json
>
> in particular:
>
> http://www.stolaf.edu/people/h
OK, I'm making my way through the resonses here. In the mean time I have
implemented (another) prototype that I would like people to take a look
at. See the files in
http://www.stolaf.edu/people/hansonr/jmol/test/json
in particular:
http://www.stolaf.edu/people/hansonr/jmol/test/json/json.htm
I'm quite eager to have a simple version of this functionality. Thanks!
a) Do you implement callbacks? If so, which ones?
No, though I'd like to (once I understood how it works -- your
mechanism I think I understand already!)
b) What WOULD you use if you had it available?
I want to kno
Bob Hanson a écrit :
AS A USER, WHAT DO YOU WANT?
a) Do you implement callbacks? If so, which ones?
With chime, I use messagecallback and pickcallback. I use message
callback to get informations such as : model sequence, names of
residues or chains in a selection, end of a script, number o
Hi Bob,
AS A USER, WHAT DO YOU WANT?
a) Do you implement callbacks? If so, which ones?
AnimFrame to synchronize other Javascript functions with an animation
Pick to identify atoms, in particular in our molecule editor
Message to return measurements, now largely replaced by monitors though
> I'm sad that both, RasMol and Jmol didn't support the PDB
> format completely e.g. ^insCode versus ;altLoc
> but I count on you and Jmol which is evolving and will make it some day,
> and is relay a great applet.
> )
> Regards, Jan
Jan,
As you know that I have tried several times to add altLoc
I'm quite eager to have a simple version of this functionality. Thanks!
a) Do you implement callbacks? If so, which ones?
No, though I'd like to (once I understood how it works -- your mechanism I
think I understand already!)
b) What WOULD you use if you had it available?
I want to know what
Bob Hanson wrote:
...
I use callbacks in RasMol to query e.g. which amino acids are in 3.2
A distance to a hetero component
(echo "load pdb inline\nselect within(3.2, [LIP]3) and not
[LIP]3\nshow selected group\nexit\n";cut 1imb.pdb) | rasmol
-nodisplay | evaluateMakeRasMolScriptFromIt.pl
Jan wrote:
we already have
monitor 111 112 113
why not
getProperty("measure","[LIP]3:A.O5","[LIP]3:A.O6","[LIP]3:A.O7")
sure, we'll do something like this.
a monitoring function on your callback.htm
monitor: measurementsChange
works for me, but I miss the corresponding e.g. "monitor 1 2
Bob Hanson wrote:
Jan wrote:
I don't see a difference whether I say
monitor 2087 2088
or
monitor ([LIP]3:A.O5) ([LIP]3:A.O6)
Oh, sure. OK. I don't know that we are headed that way wth the monitor
command, because there are some programming issues with putting two
atom expressions in the sam
Jan wrote:
I don't see a difference whether I say
monitor 2087 2088
or
monitor ([LIP]3:A.O5) ([LIP]3:A.O6)
Oh, sure. OK. I don't know that we are headed that way wth the monitor
command, because there are some programming issues with putting two atom
expressions in the same command -- nothin
Bob Hanson wrote:
...
b) What WOULD you use if you had it available?
the monitor/measure command, especially if there is no need for atom
numbers but select expressions could be used
Hmm. Usually for those you need an ordered list, right? But one could
imagine following the bonding in some
Jan wrote:
Bob Hanson wrote:
...
AS A USER, WHAT DO YOU WANT?
a) Do you implement callbacks? If so, which ones?
I only use pickCallback to monitor user picking and messageCallback to
evaluate current orientation.
Great, those are easy. Check out
http://www.stolaf.edu/people/hansonr/jmol
Timothy Driscoll wrote:
On Feb 9, 2006, at 2:07 p, Bob Hanson wrote:
AS A USER, WHAT DO YOU WANT?
as a resource developer, I want a way to ask the applet for the
status of something, have the applet respond in some logical syntax,
and then do with that info whatever I please. for example
On Feb 9, 2006, at 2:07 p, Bob Hanson wrote:
I'm looking at the Jmol callback issue.
I propose that there be a fundamentally different mechanism that
does not rely upon callback functions (but could be backward-
compatible with these if desired).
I think this is an excellent idea. Migue
Bob Hanson wrote:
...
AS A USER, WHAT DO YOU WANT?
a) Do you implement callbacks? If so, which ones?
I only use pickCallback to monitor user picking and messageCallback to
evaluate current orientation.
b) What WOULD you use if you had it available?
the monitor/measure command, especially if
On 9 Feb 2006 at 13:07, Bob Hanson wrote:
> a) Do you implement callbacks? If so, which ones?
I have not used callbacks
> b) What WOULD you use if you had it available?
> c) What sort of information (exactly) are you looking for?
The only application I envisage right now is the ability to get
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